Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30244
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80031-1|AAB37611.1|  392|Caenorhabditis elegans Downstream of d...    28   6.1  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF067216-12|AAL02459.1|  403|Caenorhabditis elegans Hypothetical...    28   8.1  
AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical...    28   8.1  

>U80031-1|AAB37611.1|  392|Caenorhabditis elegans Downstream of
           daf-16 (regulatedby daf-16) protein 20 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 568 YVLNESTIIKAGNVTFGTIYWGNQKNGIIGLCIPLAVTKLFW 693
           Y + + T+   G+ T G I    Q +G++ L + +A++ ++W
Sbjct: 342 YFVAQGTLF--GSPTSGPIQTATQSSGVVQLFVSMAISTMYW 381


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 717 VNLSKDVVPEEFGDCQWNTKSNNSVFLISPINCPKSHIAGFDNSR 583
           +++  D+  EE GD + +  +   V+LI+  NC  +H+   D+ R
Sbjct: 530 LSIRTDIADEEDGD-EADINNREEVYLINAQNCDPAHVTHGDSIR 573


>AF067216-12|AAL02459.1|  403|Caenorhabditis elegans Hypothetical
           protein C35E7.2b protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 577 NESTIIKAGNVTFGTIYWGNQKN 645
           N  T++     TFGTIYW   +N
Sbjct: 7   NHQTLVATEGATFGTIYWMMNEN 29


>AF067216-11|AAL02458.1|  707|Caenorhabditis elegans Hypothetical
           protein C35E7.2a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 577 NESTIIKAGNVTFGTIYWGNQKN 645
           N  T++     TFGTIYW   +N
Sbjct: 311 NHQTLVATEGATFGTIYWMMNEN 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,933,420
Number of Sequences: 27780
Number of extensions: 331345
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)