Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30244
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.0  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   9.3  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 243 DNSFVHYDESLKNTQNLK*TYYDTSVILAVPV 148
           +N++ +Y+ +  N  N K  YY+ + I  +PV
Sbjct: 98  NNNYNNYNYNNNNYNNYKKLYYNINYIEQIPV 129


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 216 IHHNVQMNYQITPYTYIILH 275
           +++N   NY++T  T  ILH
Sbjct: 109 LYNNADGNYEVTIMTKAILH 128


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 228 HYDESLKNTQNLK*TYYDTSVILAVPV 148
           +Y  +  N  N K  YY+ + I  +P+
Sbjct: 312 NYSNNYYNNNNYKKLYYNINYIEQIPI 338


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 58  GYNSLKGFIHL 90
           GY   KGF+HL
Sbjct: 84  GYTLFKGFVHL 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,501
Number of Sequences: 438
Number of extensions: 4509
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)