Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30243
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   148   6e-37
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.4  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.2  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   7.2  
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    25   9.5  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   9.5  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   9.5  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  148 bits (359), Expect = 6e-37
 Identities = 68/106 (64%), Positives = 86/106 (81%), Gaps = 1/106 (0%)
 Frame = +3

Query: 210 KNRQTREHLLVFFTNKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 389
           K +   E  L     KE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 390 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG    + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 26/52 (50%), Positives = 41/52 (78%)
 Frame = +2

Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
           G  +G PHTVP KV+GKCGS+T+RL+PAP    G++++P+ K+  Q+AG+++
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGA-GLVAAPVTKRFLQLAGIED 194



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 25/36 (69%), Positives = 32/36 (88%)
 Frame = +1

Query: 151 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 148 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 23
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 476 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 342
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 450 AIILAKLSVLPVRRGYWGNKS 512
           A+I  KLS LP+R   W N+S
Sbjct: 243 ALITVKLSQLPLRSLLWANES 263


>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 638 FEKL--F*ELAKTKFPVPRRGQESAGLLKNHT 549
           FE+L  F  L +T+F     GQ+S GLL +H+
Sbjct: 54  FERLRSFTSLKETEFQRGYAGQQSEGLLTHHS 85


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 189 RPSCSRRKNRQTREHLLVFFTNKEFEIIDFFLGPSLNDE 305
           R    +++NR+T +  LV  T       +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 259 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 369
           +SR+ I S+     +++  S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,891
Number of Sequences: 5004
Number of extensions: 56963
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)