Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30243
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 148 3e-36
07_01_0756 + 5819367-5820038,5820847-5821005 143 1e-34
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 46 3e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.2
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 27 9.9
08_01_0312 + 2764744-2767390,2767632-2767990 27 9.9
04_03_1045 - 21972877-21972945,21973191-21973559,21973699-21974136 27 9.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 148 bits (359), Expect = 3e-36
Identities = 70/91 (76%), Positives = 80/91 (87%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVA
Sbjct: 73 KEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVA 131
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 132 TAIRGAIILAKLSVVPVRRGYWGNKIGQPHT 162
Score = 71.7 bits (168), Expect = 5e-13
Identities = 30/52 (57%), Positives = 43/52 (82%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
G +IG+PHTVPCKVTGKCGS+T+R++PAP GI+++ +PKK Q AG+++
Sbjct: 154 GNKIGQPHTVPCKVTGKCGSVTVRMVPAP-RGSGIVAARVPKKVLQFAGIED 204
Score = 57.6 bits (133), Expect = 8e-09
Identities = 22/36 (61%), Positives = 32/36 (88%)
Frame = +1
Query: 151 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+K
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 143 bits (346), Expect = 1e-34
Identities = 68/91 (74%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVA
Sbjct: 76 KEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVA 134
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 135 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 165
Score = 73.3 bits (172), Expect = 2e-13
Identities = 31/52 (59%), Positives = 43/52 (82%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
G +IGKPHTVPCKVTGKCGS+T+R++PAP GI+++ +PKK Q AG+++
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAP-RGSGIVAAHVPKKVLQFAGIED 207
Score = 57.6 bits (133), Expect = 8e-09
Identities = 23/36 (63%), Positives = 32/36 (88%)
Frame = +1
Query: 151 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++++++WVPVTKLGRLV+E KI K+E IYL SLP+K
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 297 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 476
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 477 LPV 485
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/47 (40%), Positives = 33/47 (70%)
Frame = +2
Query: 515 KPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
KPHTV CKV K GS+T+R++ P + ++++ +PKK + AG+++
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPP-MGSSVVATRVPKKVLKFAGIED 92
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 369 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 464
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 431 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 315
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 505 TNRKATHRPLQGHRQVWFFNNPADS 579
T K H L G + W+FN PA+S
Sbjct: 240 TKAKVIHLALDGIARFWYFNLPANS 264
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +1
Query: 349 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 474
+ HV LLPLAT T +A +PLP ALLSL S L
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38
>04_03_1045 - 21972877-21972945,21973191-21973559,21973699-21974136
Length = 291
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 424 RKSPLPFEALLSLLSCLFYQFEEVTGVTNRKATH 525
R LP E LLS+LSCL + T V +R+ H
Sbjct: 38 RLGELPDELLLSILSCLTTRQAVQTSVLSRRWRH 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,646,356
Number of Sequences: 37544
Number of extensions: 413484
Number of successful extensions: 1168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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