Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30243
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 173 8e-44
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.62
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 2.5
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 3.3
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 3.3
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 3.3
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 3.3
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 5.8
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 5.8
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 173 bits (422), Expect = 8e-44
Identities = 85/104 (81%), Positives = 93/104 (89%), Gaps = 2/104 (1%)
Frame = +3
Query: 219 QTREHLLVF-FTNKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 395
+T EH+ +F KEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24 KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83
Query: 396 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 84 HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHT 127
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
G +IGKPHTVPCKVTGKCGS +RLIPAP GI+S+P+PKK QMAG+++
Sbjct: 119 GNKIGKPHTVPCKVTGKCGSTRVRLIPAPRGT-GIVSAPVPKKLLQMAGIED 169
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = +1
Query: 169 WVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
WVPVTKLGRLV++ KI LE IYLFSLPIK
Sbjct: 8 WVPVTKLGRLVKDLKIKTLEHIYLFSLPIK 37
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 470 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 291
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 290 RAEEEI 273
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 31.5 bits (68), Expect = 0.62
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 470 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 291
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 290 RAEEEI 273
R ++E+
Sbjct: 577 RNQDEL 582
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 443 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 312
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 297 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 410
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 297 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 410
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 297 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 410
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 297 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 410
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 297 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 410
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 297 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 410
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 5.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 347 TAHTFQGICCHWRQQRSYW 403
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 345 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,234,264
Number of Sequences: 59808
Number of extensions: 470569
Number of successful extensions: 1218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -