Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30243
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 161 3e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 161 4e-40
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 160 6e-40
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 160 6e-40
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 160 6e-40
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 160 6e-40
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 31 0.51
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 2.0
At2g35770.1 68415.m04389 serine carboxypeptidase S10 family prot... 29 2.7
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.7
At5g23100.1 68418.m02702 expressed protein contains Pfam profile... 28 4.7
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 4.7
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 27 8.2
At3g01450.1 68416.m00069 expressed protein 27 8.2
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 161 bits (392), Expect = 3e-40
Identities = 73/91 (80%), Positives = 84/91 (92%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVA
Sbjct: 74 KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
TAIRGAIILAKLSV+P+RRGYWGNK + HT
Sbjct: 134 TAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
G +IGKPHTVPCKVTGKCGS+T+R++PAP GI+++ +PKK Q AG+ +
Sbjct: 156 GNKIGKPHTVPCKVTGKCGSVTVRMVPAP-RGSGIVAARVPKKVLQFAGIDD 206
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++++WVPVTKLGRLV+EGKI K+E IYL SLP+K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 161 bits (391), Expect = 4e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 83 KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 143 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
G +IGKPHTVPCKVTGKCGS+T+R++PAP GI+++ +PKK Q AG+ +
Sbjct: 165 GNKIGKPHTVPCKVTGKCGSVTVRMVPAP-RGSGIVAARVPKKVLQFAGIDD 215
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/34 (61%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++++WVPVTKLGRLV G I ++E IYL SLP+K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 160 bits (389), Expect = 6e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
G +IGKPHTVPCKVTGKCGS+T+R++PAP GI+++ +PKK Q AG+ +
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAP-RGSGIVAARVPKKVLQFAGIDD 214
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 160 bits (389), Expect = 6e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
G +IGKPHTVPCKVTGKCGS+T+R++PAP GI+++ +PKK Q AG+ +
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAP-RGSGIVAARVPKKVLQFAGIDD 214
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 160 bits (389), Expect = 6e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
G +IGKPHTVPCKVTGKCGS+T+R++PAP GI+++ +PKK Q AG+ +
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAP-RGSGIVAARVPKKVLQFAGIDD 214
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 160 bits (389), Expect = 6e-40
Identities = 74/91 (81%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 434
KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVA
Sbjct: 82 KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141
Query: 435 TAIRGAIILAKLSVLPVRRGYWGNK-SESHT 524
TAIRGAIILAKLSV+PVRRGYWGNK + HT
Sbjct: 142 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +2
Query: 500 G*QIGKPHTVPCKVTGKCGSLTIRLIPAPFVVLGILSSPIPKKAFQMAGLQE 655
G +IGKPHTVPCKVTGKCGS+T+R++PAP GI+++ +PKK Q AG+ +
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAP-RGSGIVAARVPKKVLQFAGIDD 214
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = +1
Query: 157 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIK 258
++ +WVPVTKLGRLV + KI KLE IYL SLP+K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 300 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 479
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 480 PV 485
V
Sbjct: 209 QV 210
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 346 PARVCFCTGMIFRTSSFRDGPRKKSMISNSLLVKKTSK 233
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -1
Query: 517 LSDLLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 338
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 337 VCFCTGMIFRTSSFR 293
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At2g35770.1 68415.m04389 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II precursor
(Carboxypeptidase D) (CP-MII) (SP:P08818) [Hordeum
vulgare]
Length = 462
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 532 LQGHRQVWFFNNPADS-CPLRGTGNFVFANS*KSFSNGWF 648
LQ H ++W F+ +D+ PL GT + + A KS S W+
Sbjct: 365 LQAHLRIWIFSGDSDAVLPLSGTRHSINAMKLKS-SKRWY 403
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 366 AFVAIGDNNGHIGLGVKCSKE 428
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g23100.1 68418.m02702 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 277
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 615 GEDKIPSTTKGAGISRIVKEPHLPVTLQGTVCGF 514
G DK +TT A R+V+EP G CGF
Sbjct: 162 GGDKTKTTTTAAVSRRLVEEPMWRTYCNGKKCGF 195
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 549 LPVTLQGTVCGFPICYPSNLF 487
LP+ LQG + GF + PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 295 RDGPRKKSMISNSLLVKKTSKCSRVCRFFLREQDGR 188
R+ P ++++ +LL T KC C RE+ GR
Sbjct: 288 RNCPHLETLVLEALLHHVTDKCGDACACVSREEKGR 323
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -1
Query: 451 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 329
A A+ H +P + P L P N R+R A CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,872
Number of Sequences: 28952
Number of extensions: 318534
Number of successful extensions: 905
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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