Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30242
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    23   3.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.7  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 350 RGRY*TVYRLLSIVNFISKLDAIIWATNLLHHFSSDSSPLLIVLTFSA 207
           +G   T Y L+S    I +L ++      +H  SS   PLL  ++ S+
Sbjct: 189 KGTLKTAYYLISFALLIMRLISVCLCGASVHSESSKVLPLLFSVSSSS 236


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 126 LWSHSLGAGC 155
           +WS+SL AGC
Sbjct: 1   MWSNSLTAGC 10


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 148 PAVGFADFSPTELYNLSEGIAENVNTINS 234
           P  GF   +P E++ ++ G       INS
Sbjct: 323 PNTGFMTNTPLEVFTITPGRRYRFRMINS 351


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 148 PAVGFADFSPTELYNLSEGIAENVNTINS 234
           P  GF   +P E++ ++ G       INS
Sbjct: 323 PNTGFMTNTPLEVFTITPGRRYRFRMINS 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,927
Number of Sequences: 336
Number of extensions: 3078
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)