Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30242
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    27   2.6  
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    27   3.4  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   6.0  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   7.9  
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    25   7.9  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   7.9  

>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 183 FCWTEICKAHSRHR 142
           FCW  IC AH R+R
Sbjct: 447 FCWGSICLAHIRYR 460


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 133 ATASVPAVGFADFSPTELYNLSEGIAENVNTI 228
           A A +  VGFA  SP  L N+S    E +NT+
Sbjct: 78  AKAHIILVGFAIDSPDSLENVSTKWIEEINTL 109


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 335 TVYRLLSIVNFISKLDAII 279
           TVYRL  + N + KLD +I
Sbjct: 218 TVYRLSEVDNLVKKLDTVI 236


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 308 NFISKLDAIIWATNLLHHFSSDSSPLLIV 222
           +F+SK   I+W  +L+ H+S     L ++
Sbjct: 711 SFVSKRKIILWFWDLISHYSLKMQKLFLI 739


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/61 (22%), Positives = 32/61 (52%)
 Frame = +3

Query: 291 QLRDKIHDTQQTVNSSVSATARDIQRLGVVVRRGDKPQKLQVERLTQAFTDCLAKYSSVQ 470
           QLRDK+ + ++T    +  + R  + L   +++ D+ ++ ++   T  FT   A   S++
Sbjct: 43  QLRDKLKNVRKTYCGLIVTSQRVSETLDEALKQEDETERQKILMETPIFTVGPATDDSIR 102

Query: 471 K 473
           +
Sbjct: 103 R 103


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 276 PNDSVQLRDKIHDTQQTVNSSVSATAR 356
           PN  +QL D +   Q+ + SSVS  +R
Sbjct: 204 PNKIIQLSDSLKKQQENIASSVSNISR 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,438
Number of Sequences: 5004
Number of extensions: 51869
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)