Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30242
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1076 - 8474869-8474934,8475028-8475128,8475248-8475405,847...    40   0.002
10_08_0400 + 17625818-17625860,17626133-17626464,17626471-176267...    32   0.51 
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    28   8.3  
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581...    28   8.3  

>01_01_1076 -
           8474869-8474934,8475028-8475128,8475248-8475405,
           8475554-8475628,8476528-8476667,8477284-8477377,
           8478063-8478271
          Length = 280

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = +3

Query: 255 MMKQIGGPNDSVQLRDKIHDTQQTVNSSVSATARDIQRLGVVVRRGD--KPQKLQVERLT 428
           ++  +G P D+  LR++IH T+Q +   V  T+  +++      R +    +K+   +L 
Sbjct: 53  LVNTLGTPKDTPDLRERIHKTRQHITQLVKDTSEKLKQASEADHRVEVSASKKIADAKLA 112

Query: 429 QAFTDCLAKYSSVQKKVSEKMAAHMP 506
           + F   L ++   Q+   E+ AA+ P
Sbjct: 113 KDFQAVLKEFQKAQRLAVEREAAYAP 138


>10_08_0400 +
           17625818-17625860,17626133-17626464,17626471-17626773,
           17626862-17627002,17627360-17627476
          Length = 311

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +1

Query: 16  QRKTKF----C*KPASSKQCWTTLILSTMSEREPINGSGRDYGATASVPAVGFADFSPTE 183
           Q+ T+F    C    SS    T  I   +S+ E   G GRDY   A  P +G ++     
Sbjct: 8   QKHTRFRIAVCKLAVSSSLVRTEKISMAISQEEQHAGGGRDYAEPAPQPFLGSSELRRWS 67

Query: 184 LYNLSEGIAENVNTI 228
           LY  +  IAE V T+
Sbjct: 68  LYRAA--IAEFVATL 80


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 638 KQHARFKLQRDGPELVAELKQPIPRRQPSLAAPT 537
           K+ + F  + D PE  A+   P+PRR+PS  A T
Sbjct: 494 KRRSSFSTKSDYPENGAQ-NTPVPRRKPSYMAAT 526


>01_05_0080 -
           17957276-17957676,17957810-17957921,17958001-17958126,
           17958199-17958331,17960069-17960193,17960314-17960409,
           17960430-17960621,17960694-17960800,17961318-17961426,
           17961538-17961624,17963017-17963103,17964254-17964379
          Length = 566

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 125 TMEPQPRCRLWALQISVQQNSTI*VRASQRMSIRLTVD 238
           T  P  + RLW++QIS ++ S+  +  SQ    ++T D
Sbjct: 430 TNNPSVKVRLWSIQISDKRKSSTDLSTSQPPLKKMTTD 467


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,139,761
Number of Sequences: 37544
Number of extensions: 364065
Number of successful extensions: 834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)