Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30242
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51867| Best HMM Match : TP2 (HMM E-Value=9.2)                       31   1.2  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      29   3.6  
SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)             29   4.8  
SB_16713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  

>SB_51867| Best HMM Match : TP2 (HMM E-Value=9.2)
          Length = 370

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +2

Query: 470 KESIREDGGSHAQPARVRNDPQLLEQQA 553
           K+S R+DGG+ AQ  R+ N PQ +E+QA
Sbjct: 22  KKSNRKDGGTRAQKGRLLNRPQ-MEKQA 48


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -1

Query: 529  IVSHACRLGM*AAIFSDTFF*TDEYLARQSVKACVNLSTCNFCGLSPRRTTTPSRCMSRA 350
            +++ AC + M   ++  T   T    +    KACV ++T  +    PR TT+PS  ++RA
Sbjct: 1673 VLARACEV-MNTRVYVHTHPRTTTSPSTALAKACVVMNTRVYIHTHPRSTTSPSTVLARA 1731



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 436  KACVNLSTCNFCGLSPRRTTTPSRCMSRA 350
            +ACV ++T  +    PR TT+PS  ++RA
Sbjct: 1559 RACVVMNTRVYVHTHPRSTTSPSTVLARA 1587


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 418 STCNFCGLSPRRTTTPSRCMS 356
           +TCNFCG   R+T++  R +S
Sbjct: 242 ATCNFCGKDARKTSSTKRSLS 262


>SB_50756| Best HMM Match : S-antigen (HMM E-Value=2.4e-09)
          Length = 712

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 252 EMMKQIGGPNDSVQLRDKIHDTQQTVNSSVSATARDIQRLGVVVRRGDKPQKLQVERL 425
           EM KQI      ++   + +++ Q  NSS     RD++R  V + +     K  +ERL
Sbjct: 636 EMAKQIDELEQHIETLKQQNNSLQRNNSSFEGEKRDLERSNVRIAKDVSALKRTLERL 693


>SB_16713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 138  SLGAGCGLCRFQSNRTLQFE*GHRRECQYD*QWTTVA*EMMKQIGGPNDSVQLRDKIHDT 317
            S+ + CGLC+    R  ++   HRR   Y+        + +      ND V+L +   + 
Sbjct: 840  SIASECGLCKAVYERYRKYSNSHRRAGSYNVTSALKKSDYINDYAVENDGVELEES--NR 897

Query: 318  QQTVNSS 338
            QQT   S
Sbjct: 898  QQTTAKS 904


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,828,348
Number of Sequences: 59808
Number of extensions: 402366
Number of successful extensions: 1001
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)