Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30242
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.8  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.6  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 665 FGSSRVFRLKQHARFKLQRDGPELVAELKQPI 570
           F +S +F+LKQH R  + +    L  + K  +
Sbjct: 166 FKNSNIFQLKQHMRDTMNKIAETLDEDTKNKL 197


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 197 VRASQRMSIRLTVDYCRLRNDE 262
           V  +Q++SIR+T    RLR+ E
Sbjct: 111 VERAQQLSIRVTYASARLRSQE 132


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 154 QPAPRLWLHSLALNH*LVLVLTLCSEL 74
           Q A   +L SLA++  ++LVL L +EL
Sbjct: 72  QTATNYYLFSLAISDLILLVLGLPNEL 98


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 129 WSHSLGAGCGL 161
           WSH LG  CGL
Sbjct: 527 WSHVLGWLCGL 537


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 129 WSHSLGAGCGL 161
           WSH LG  CGL
Sbjct: 580 WSHVLGWLCGL 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,192
Number of Sequences: 438
Number of extensions: 3948
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)