Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30242
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog ide...    39   0.003
At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protei...    37   0.015
At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to...    36   0.034
At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein co...    29   3.0  
At1g77280.1 68414.m09000 protein kinase family protein contains ...    27   9.1  

>At5g16830.1 68418.m01972 syntaxin 21 (SYP21) / PEP12 homolog
           identical to Syntaxin homolog (PEP12 homolog)
           (SP:Q39233) and syntaxin of plants 21 (GP:899122)
           {Arabidopsis thaliana}; contains Pfam profiles
           PF05739:SNARE domain and PF00804:  Syntaxin
          Length = 279

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +3

Query: 255 MMKQIGGPNDSVQLRDKIHDTQQTVNSSVSATARDIQRLGVVVRRGDKPQ--KLQVERLT 428
           ++  IG P D+++LRDK+  T+  ++  V  T+  ++        G   Q  K+   +L 
Sbjct: 53  LVNSIGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLA 112

Query: 429 QAFTDCLAKYSSVQKKVSEKMAAHMP 506
           + F   L ++   Q+  +E+   + P
Sbjct: 113 KDFQSVLKEFQKAQRLAAEREITYTP 138


>At4g17730.1 68417.m02647 syntaxin 23 (SYP23) / PEP12-like protein
           identical to SP|O04378 Syntaxin 23 (AtSYP23) (AtPLP)
           (AtPEP12-like protein) {Arabidopsis thaliana}
          Length = 255

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
 Frame = +3

Query: 255 MMKQIGGPNDSVQLRDKIHDTQQTVNSSVSATARDIQRLGVV-VRRG-DKPQKLQVERLT 428
           ++  +G P D+ +LR+K+H T+  +   V  T+  ++       +RG ++ +K+   +L 
Sbjct: 50  LVNTLGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLA 109

Query: 429 QAFTDCLAKYSSVQKKVSEKMAAHMPNRH 515
           + F   L ++   Q+  +E+   + P  H
Sbjct: 110 KDFQAVLKEFQKAQRLAAERETVYAPLVH 138


>At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to
           GP|8809669| syntaxin related protein AtVam3p
           [Arabidopsis thaliana]
          Length = 268

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +3

Query: 255 MMKQIGGPNDSVQLRDKIHDTQQTVNSSVSATARDIQRLGVVVRR-GDKP-QKLQVERLT 428
           ++  +G P D+ +LR+K+H T+  +   V  T+  ++       + G  P +K+   +L 
Sbjct: 45  LVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLA 104

Query: 429 QAFTDCLAKYSSVQKKVSEKMAAHMP 506
           + F   L ++   Q+  +E+   + P
Sbjct: 105 RDFQAVLKEFQKAQQTAAERETTYTP 130


>At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein
           contains Pfam PF00728: Glycosyl hydrolase family 20,
           catalytic domain; contains Pfam PF02838: Glycosyl
           hydrolase family 20, domain 2; similar to
           Beta-hexosaminidase beta chain precursor (EC 3.2.1.52)
           (N-acetyl-beta- glucosaminidase)
           (Beta-N-acetylhexosaminidase) (Hexosaminidase B)
           (Swiss-Prot:P07686) [Homo sapiens]
          Length = 535

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 405 SAVCHHDERQRPVAVCLAPWPILNCLPSVEYREFYL*VGRYHL 277
           S +CH + +++ + + + PW I++  P   YR   +   R++L
Sbjct: 155 SQLCHFNLKKKVIEILMTPWNIID-QPRFSYRGLLIDTSRHYL 196


>At1g77280.1 68414.m09000 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 794

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 424 NLSTCNFCGLSPRRTTTPSR 365
           N S C F  LSP  TTTP +
Sbjct: 275 NCSVCGFDSLSPNDTTTPGK 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,637
Number of Sequences: 28952
Number of extensions: 279158
Number of successful extensions: 630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)