Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30241
         (577 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.3  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   3.3  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   4.3  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 461 NVGAGYSICGIKPSFSTMGQGSAGLQYASQGYPANGHAT 577
           ++GA  S   +KP  ST+GQ S     +   +   GH +
Sbjct: 18  SLGAPQSPLDMKPDASTLGQFSPQGPNSPVSFSMGGHGS 56


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 571 MTISRIPLRCVLKPSRSLTHRTKAWFYSTNTISSSDINRAG 449
           +T+S +     L+ S S+  +     +     SSSD NR G
Sbjct: 379 LTVSSVSKPEALRLSGSVVTKVTCELFQATLSSSSDTNRFG 419


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 181 HGADKLIKVMNATVNFIL 128
           H   KLIK +NAT   IL
Sbjct: 220 HRLSKLIKQLNATYGLIL 237


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +1

Query: 271 ICWTVSVELYIFWTV---SIELYIFWTVSIGLCIFWTLFSKLSAIISNQYTKLPTSHEFA 441
           IC+ ++   Y  WT     + +Y+ W  S+  CI        +++  ++Y    T  E  
Sbjct: 142 ICYPLT---YCSWTSRRSKVMVYLAWVASLAFCIPQLTIFTYTSVGEDEYDCWATFQE-P 197

Query: 442 WRCQLY 459
           W  + Y
Sbjct: 198 WGKRAY 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,882
Number of Sequences: 336
Number of extensions: 2810
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14308417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)