Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30241
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    32   0.069
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    30   0.21 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.64 
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   1.5  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    27   2.6  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    26   3.4  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   6.0  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    25   6.0  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   7.9  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   7.9  

>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 31.9 bits (69), Expect = 0.069
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +3

Query: 282 SLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPAL- 458
           ++RRA H +  L R +  L +  + +H +     +   H+K +     +P +R     L 
Sbjct: 321 NIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKP-LRFCAERLT 379

Query: 459 -LMSELDIVFVE*NQALVRWVKDLLGFSTHLKGILLMVMP 575
            L+  L I  VE   +L + V      +T+ +G +L++ P
Sbjct: 380 SLVRALQISLVEDFHSLQQVVAFATLVATYERGFILILEP 419


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 15/66 (22%), Positives = 36/66 (54%)
 Frame = -3

Query: 401 DMMADSLLKSVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQMHSLMKVSMYIACRGFS 222
           DM A++ ++ +    + +ET+Q+ Y  +E V  +Y+S   ++ +    +   ++   GF 
Sbjct: 143 DMSAENAME-LSSSTNLLETLQEKYFGVEDV--LYTSKRIIKSLKLSDRSDYFLVVSGFG 199

Query: 221 FILYIV 204
           F +++V
Sbjct: 200 FFIFVV 205


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 328  YIFWTVSIGLCIFWTLFSKLSAIISN--QYTKLPTSHEF 438
            Y+    +IGLC  +  F+  + IIS   Q T+LPT + F
Sbjct: 1040 YVCLCTTIGLCNIYLCFANENHIISRCLQITRLPTLYRF 1078


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 336  LDSLHRTMHFLDTLQQAISHHIKSVH 413
            L  LHR    LD L+Q I + I+SVH
Sbjct: 1101 LTHLHRAYKGLDPLKQIIGYPIRSVH 1126


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 313 VSIELYIFWTVSIGLCIFWTLF 378
           ++++LY+F    +GL + W LF
Sbjct: 99  ITLDLYVFGATGLGLILSWKLF 120


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 298 YIFWTVSIELYIFWTVSIGLCIFWTLFSKLSAIISNQYTKLPTSHEF 438
           +++  V+++  I   +   +C++W +FSKL  II N+  +    H F
Sbjct: 13  FLYLMVNVQCRIKEIMYWNICLYWDVFSKL--IIYNKVCQFGRIHIF 57


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 504 LVRWVKDLLGFSTHLKGILLMVMP 575
           L  W+  L G+  H K IL++++P
Sbjct: 349 LCGWISFLFGWHVHEKAILMVILP 372


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
 Frame = +1

Query: 319 IELY--IFWTVSIGLCIFWTLFSKLSAIISNQYTKLPTSHEFAW 444
           I+LY  + W  S   CI +  F + S +    YT     + F W
Sbjct: 73  IQLYEPLLWLSSFPFCILYVGFGENSVLYHEMYTMEMALYCFRW 116


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 228 APASYVH-GHLHQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIK 404
           AP    H G+    M L D L+  +H+   L      LD++   M  +    +     +K
Sbjct: 41  APTGRPHCGYFVPMMKLADFLKAGVHVTVLLADVHAFLDNMKAPMELVQHRVRYYEIIVK 100

Query: 405 SVHKTTNQP 431
           S+ K+ N P
Sbjct: 101 SILKSLNIP 109


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 210  VKDKREAPASYVHGH--LHQAMHLLDSLRRAIHLLDSL 317
            +K  +E P+   H H  L   +H ++S   A+H+ D L
Sbjct: 1257 IKVCKETPSMLYHSHGLLPAILHYIESNNSAMHISDCL 1294


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 401 DMMADSLLKSVQKMHSPMETVQKMYSSMETVQ 306
           DM+ + LLK   K HS  E ++++   + ++Q
Sbjct: 397 DMLRNKLLKEEHKHHSTSEKLEELSKYVASIQ 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,925
Number of Sequences: 5004
Number of extensions: 47041
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)