Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30241
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819...    32   0.28 
07_01_0281 - 2067696-2068862                                           29   3.5  
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114...    28   4.6  
05_05_0023 + 21605803-21605917,21606054-21606148,21606261-216063...    28   6.1  

>05_05_0127 -
           22580720-22580808,22580936-22580987,22581703-22581908,
           22582019-22582152,22582239-22582369,22583333-22583392,
           22583615-22583755,22583880-22584347,22584524-22584686,
           22585373-22585476,22585755-22585853,22586177-22586281,
           22586516-22586596,22587168-22587986,22588497-22588553
          Length = 902

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +2

Query: 371 HSSASYQP--SYQISTQNYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQGSAGLQYA 544
           HS A++QP  S+Q S     P +N++ +A       GY         ST   GS    YA
Sbjct: 142 HSGAAHQPLTSFQNSESYVGPTSNTYYNAGGHQTAPGYGTSNSYYQNSTWNGGSFENNYA 201

Query: 545 S--QGYPANGHAT 577
              Q YP++   T
Sbjct: 202 QSYQNYPSSNTNT 214


>07_01_0281 - 2067696-2068862
          Length = 388

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 413 QNYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQGSAGLQ 538
           Q+ +  T++ G  S  + G G S  G KP+ S+    SAG Q
Sbjct: 231 QHGRITTSNGGSGSGSDKGKGVSYAGDKPASSSSSSSSAGQQ 272


>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
            33334405-33334484
          Length = 1811

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 339  PEDV*LDGDCPEDV*LDGDCPADA 268
            PED+  +G+C     LD +CP DA
Sbjct: 1063 PEDIGTEGECAPRGHLDEECPGDA 1086


>05_05_0023 +
           21605803-21605917,21606054-21606148,21606261-21606318,
           21606458-21606652,21607001-21607080,21607182-21607247,
           21607572-21607680,21608161-21608247,21608315-21608393,
           21608490-21608622
          Length = 338

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 226 KPLQAMYMDTFIKLCICWTVSVELYIFWTVSIELYIFW-TVSIGLCI 363
           K  Q  Y+ T + L  CWTV   + + W      Y FW  V  G C+
Sbjct: 92  KAYQYSYI-TSVTLLDCWTVVWVVILTWYALGTRYSFWQIVGAGTCV 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,630
Number of Sequences: 37544
Number of extensions: 311196
Number of successful extensions: 864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)