Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30241
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_9039| Best HMM Match : M (HMM E-Value=0.00046) 37 0.014
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18) 34 0.072
SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069) 33 0.17
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8) 31 0.67
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81) 30 1.2
SB_8345| Best HMM Match : SNF7 (HMM E-Value=1.6) 30 1.6
SB_56706| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_51259| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.4e-08) 29 2.7
SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11) 29 2.7
SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031) 29 3.6
SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37) 28 4.8
SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06) 28 4.8
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_46690| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_37316| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_8242| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=7) 28 4.8
SB_46215| Best HMM Match : DUF444 (HMM E-Value=0) 28 6.3
SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 28 6.3
SB_24033| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_16243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_9874| Best HMM Match : Sigma54_activat (HMM E-Value=0) 28 6.3
SB_8395| Best HMM Match : Arm (HMM E-Value=2.3) 28 6.3
SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046) 27 8.3
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 27 8.3
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1) 27 8.3
SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 27 8.3
>SB_38138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 568
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 280 TVSVELYIFWTVSIELYIFWTVSIGLCIFWTL-FSKLSAIISNQYTKLPTSHEFAWR 447
TVS++ Y +WTVSI+ Y +WTVSI +WT+ + +S Q+ S ++A+R
Sbjct: 154 TVSIQ-YAYWTVSIQ-YAYWTVSIQYA-YWTVSIQYVYRTVSIQFAYRTVSIQYAYR 207
>SB_9039| Best HMM Match : M (HMM E-Value=0.00046)
Length = 716
Score = 36.7 bits (81), Expect = 0.014
Identities = 8/38 (21%), Positives = 26/38 (68%)
Frame = +1
Query: 277 WTVSVELYIFWTVSIELYIFWTVSIGLCIFWTLFSKLS 390
WT V++Y++ ++++++I W + +G+ + W + + ++
Sbjct: 381 WTFIVDIYLYCVINVDIHIEWAIIVGIYLEWAIIADIN 418
Score = 32.3 bits (70), Expect = 0.29
Identities = 7/33 (21%), Positives = 22/33 (66%)
Frame = +1
Query: 277 WTVSVELYIFWTVSIELYIFWTVSIGLCIFWTL 375
W + V++++ WT +++Y++ +++ + I W +
Sbjct: 371 WVIIVDIHLEWTFIVDIYLYCVINVDIHIEWAI 403
Score = 29.9 bits (64), Expect = 1.6
Identities = 9/44 (20%), Positives = 23/44 (52%)
Frame = +1
Query: 241 MYMDTFIKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWT 372
+Y + + I W + V +Y+ W + ++ + W + + + + WT
Sbjct: 389 LYCVINVDIHIEWAIIVGIYLEWAIIADINLEWVIIVDIHLEWT 432
Score = 29.1 bits (62), Expect = 2.7
Identities = 6/32 (18%), Positives = 19/32 (59%)
Frame = +1
Query: 277 WTVSVELYIFWTVSIELYIFWTVSIGLCIFWT 372
W + ++ + W + +++++ WT + + + WT
Sbjct: 411 WAIIADINLEWVIIVDIHLEWTFIVDIHLEWT 442
Score = 27.9 bits (59), Expect = 6.3
Identities = 6/27 (22%), Positives = 18/27 (66%)
Frame = +1
Query: 277 WTVSVELYIFWTVSIELYIFWTVSIGL 357
W + V++++ WT +++++ WT + +
Sbjct: 421 WVIIVDIHLEWTFIVDIHLEWTFIVDI 447
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/42 (21%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 253 TFI-KLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWTL 375
TFI + + ++V+++I W + + +Y+ W + + + W +
Sbjct: 382 TFIVDIYLYCVINVDIHIEWAIIVGIYLEWAIIADINLEWVI 423
>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2051
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 234 ASYVHGHLHQAMHLLDSLRRAIHLLDSLH-RAIHLLD-SLHRTMHFLD 371
A +V H + +H+LD R +H+LD L R +H+LD S +R ++ LD
Sbjct: 2003 APHVLDHSLRFLHVLDHSLRVLHVLDQLFCRVLHVLDHSFYRVLNVLD 2050
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 261 QAMHLLDSLRRAIHLLDSLHRAIHLLDSLH-RTMHFLD 371
+A H+LD R +H+LD R +H+LD L R +H LD
Sbjct: 2002 RAPHVLDHSLRFLHVLDHSLRVLHVLDQLFCRVLHVLD 2039
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 291 RAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISH 395
RA H+LD R +H+LD R +H LD L + H
Sbjct: 2002 RAPHVLDHSLRFLHVLDHSLRVLHVLDQLFCRVLH 2036
>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
Length = 521
Score = 34.3 bits (75), Expect = 0.072
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 241 MYMDTFIKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWTLFSKL 387
++ D F+ L I + V LYIF + + LYIF V + L + +F L
Sbjct: 7 IFRDLFVSLYILRVMFVSLYIFRDLFVSLYIFRDVFVSLYVLRVMFVSL 55
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 241 MYMDTFIKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWTLFSKL 387
++ D F+ L + + V LYI + + LYIF V + L + +F L
Sbjct: 37 IFRDVFVSLYVLRVMFVSLYILRVMFVSLYIFRDVFVSLYVLRDMFVSL 85
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 241 MYMDTFIKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWTLFSKL 387
++ D F+ L I V V LY+ + + LYI + + L IF +F L
Sbjct: 27 IFRDLFVSLYIFRDVFVSLYVLRVMFVSLYILRVMFVSLYIFRDVFVSL 75
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 256 FIKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWTLFSKL 387
F+ L I + V LYI + + LYIF + + L IF +F L
Sbjct: 2 FVSLYIFRDLFVSLYILRVMFVSLYIFRDLFVSLYIFRDVFVSL 45
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 256 FIKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWTLFSKL 387
F+ L I + V LYIF V + LY+ + + L I +F L
Sbjct: 52 FVSLYILRVMFVSLYIFRDVFVSLYVLRDMFVSLYILRVMFVSL 95
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 256 FIKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWTLFSKL 387
F+ L I + V LYIF V + LY+ + + L I +F L
Sbjct: 22 FVSLYIFRDLFVSLYIFRDVFVSLYVLRVMFVSLYILRVMFVSL 65
>SB_21305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 33.9 bits (74), Expect = 0.096
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 240 YVHGHL----HQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIKS 407
++ H H + H L L + H L LH + H L LH + H L + + SH ++
Sbjct: 110 HMSSHTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHTLQVLHMSSHTLQVIDMS-SHTLQV 168
Query: 408 VHKTTN 425
+H +++
Sbjct: 169 LHMSSH 174
>SB_53200| Best HMM Match : Apolipoprotein (HMM E-Value=0.0069)
Length = 246
Score = 33.1 bits (72), Expect = 0.17
Identities = 23/94 (24%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Frame = +3
Query: 156 TLISLSAPWSVLAKRADDVKDKREAPASYVHGHLHQAMHLLD-SLRRAIHLLD-SLHRAI 329
+L +L L + D+ + + P + L +++ LD S ++ LD SL ++
Sbjct: 32 SLETLDESLETLDESLDESLETLDEPLETLDESLDESLETLDESPDESLETLDESLDESL 91
Query: 330 HLLDSLHRTMH-FLDTLQQAISHHIKSVHKTTNQ 428
LD T+H L+TLQ+++ ++S+H++ ++
Sbjct: 92 ETLDESLETLHESLETLQESLEKLLESLHESLDE 125
>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
Length = 627
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 276 LDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAIS 392
LD+L RA+ LD+L R LD+L R + LDTL + ++
Sbjct: 154 LDTLPRAVTRLDTLLRVGTRLDTLPRVVTRLDTLPRVVT 192
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 276 LDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAIS 392
LD+L R LD+L RA+ LD+L R LDTL + ++
Sbjct: 144 LDTLPRVGTRLDTLPRAVTRLDTLLRVGTRLDTLPRVVT 182
>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
Length = 468
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +1
Query: 259 IKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFW 369
I + W V+V + W V++ + W V++ + W
Sbjct: 137 ISSSVTWVVTVSFSVTWVVTVSFNVTWVVTVCSSVTW 173
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +1
Query: 271 ICWTVSVELYIFWTVSIELYIFWTVSIGLCIFW 369
+ W V+V + W V++ + W V++ + W
Sbjct: 331 VTWVVTVSFSVTWVVTVSFNVTWVVTVCSSVTW 363
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +1
Query: 271 ICWTVSVELYIFWTVSIELYIFWTVSIGLCIFW--TLFSKLSAI--ISNQYTKLPT-SHE 435
+ W V+V + V++ + W V++ + W T+ S ++++ +S+ T++ T S
Sbjct: 201 VTWVVTVSSSVTLVVTVSSSVTWVVTVSSSVTWVVTVSSSVTSVVTVSSSVTRVVTVSFS 260
Query: 436 FAW 444
W
Sbjct: 261 VTW 263
>SB_8345| Best HMM Match : SNF7 (HMM E-Value=1.6)
Length = 216
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+Q+M +T T+Q+M
Sbjct: 7 TLQRMTDNTSTLQRMTDNTSTLQRMTDNTSTLQRM 41
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+Q+M +T T+Q+M
Sbjct: 17 TLQRMTDNTSTLQRMTDNTSTLQRMTDNTSTLQRM 51
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+Q+M +T T+Q+M
Sbjct: 27 TLQRMTDNTSTLQRMTDNTSTLQRMTGNTSTLQRM 61
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+Q+M +T T+Q+M
Sbjct: 37 TLQRMTDNTSTLQRMTGNTSTLQRMTDNTSTLQRM 71
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+Q+M +T T+Q+M
Sbjct: 47 TLQRMTGNTSTLQRMTDNTSTLQRMTDNTSTLQRM 81
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+Q+M +T T+Q+M
Sbjct: 177 TLQRMTDNTSTLQRMNDNTSTLQRMTDNTSTLQRM 211
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+Q+M T T+Q+M
Sbjct: 97 TLQRMTDNTSTLQRMTDNTSTLQRMTDITSTLQRM 131
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M T+Q+M +T T+Q+M
Sbjct: 107 TLQRMTDNTSTLQRMTDITSTLQRMTDNTSTLQRM 141
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+Q+M +T T+++M
Sbjct: 57 TLQRMTDNTSTLQRMTDNTSTLQRMTDNTSTLRRM 91
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+++M +T T+Q+M
Sbjct: 67 TLQRMTDNTSTLQRMTDNTSTLRRMTDNTSTLQRM 101
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+++M + T+Q+M +T T+Q+M
Sbjct: 77 TLQRMTDNTSTLRRMTDNTSTLQRMTDNTSTLQRM 111
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++++M T+Q+M + T+Q+M +T T+Q+M
Sbjct: 87 TLRRMTDNTSTLQRMTDNTSTLQRMTDNTSTLQRM 121
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++Q+M T+Q+M + T+Q+M T T+Q+M
Sbjct: 117 TLQRMTDITSTLQRMTDNTSTLQRMTDITSTLQRM 151
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 383 LLKSVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQMH 267
+ ++Q+M T+ +M + T+Q+M +T T+Q+M+
Sbjct: 154 ITSTLQRMTDNTSTLPRMTDNTSTLQRMTDNTSTLQRMN 192
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 383 LLKSVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
+ ++Q+M T+Q+M T+Q+M T T+Q+M
Sbjct: 124 ITSTLQRMTDNTSTLQRMTDITSTLQRMTDITSTLQRM 161
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 383 LLKSVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
+ ++Q+M T+Q+M + T+ +M +T T+Q+M
Sbjct: 144 ITSTLQRMTDITSTLQRMTDNTSTLPRMTDNTSTLQRM 181
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 374 SVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQM 270
++ +M T+Q+M + T+Q+M +T T+Q+M
Sbjct: 167 TLPRMTDNTSTLQRMTDNTSTLQRMNDNTSTLQRM 201
>SB_56706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 386 SLLKSVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQMHS 264
S L ++ HS + ++ YSS+ ++ YSS ++ HS
Sbjct: 10 SSLFLIRHTHSSLSLIRDTYSSLSLIRHTYSSLSLIRHTHS 50
>SB_51259| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.4e-08)
Length = 181
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +3
Query: 255 LHQAMHLLDSLRRAIHLLDSLHRA---IHLLDSLHRTMHFLDTL 377
LH+A+ L SLR+ + +L + RA +H LD +HR + + L
Sbjct: 5 LHRALPRLTSLRKRLEILLDVARALKYLHSLDLIHRDVKLQNVL 48
>SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)
Length = 1011
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = -3
Query: 398 MMADSLLKSVQKMHSPMETVQKMYSSMETVQKMYSSTETVQQMHSLMKVSMYIAC 234
++ + +L +K+++ + +QK +S+E + ++ T+T Q L+K I C
Sbjct: 180 VLEEEILWRAEKINALISDLQKKENSLEEMTELLKDTQTRLQSEKLVKNEYIIKC 234
>SB_2260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Frame = +3
Query: 243 VHGHLHQAMHLLD--SLRRAIHLLD------SLHRAIHLLDSLH--RTMHFLDTLQQAIS 392
++ H +A+H+L +RA+++L +LHRA+H+L H R +H L +
Sbjct: 78 LYTHTKRALHVLHYTHTKRALNVLHYTHAKRTLHRALHVLHYTHTKRALHVLHYTHTKRT 137
Query: 393 HHIKSVHKTTNQPRIRM 443
H+ +H T +P + +
Sbjct: 138 LHV--LHYTHTKPALHV 152
>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
Length = 563
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = -1
Query: 511 RTKAWFYSTNTISSSDINRAGIAMRIRGWLVVLCTDLI*WLIAC*RVSRKCIV 353
R + ++Y T+ +SS + +A+R+ VVLC ++ ++C RV C+V
Sbjct: 303 RNRGFYYFTSELSSQLLCFTVLALRVVTCCVVLCCAVLCRAVSC-RVVLCCVV 354
>SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37)
Length = 875
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +3
Query: 231 PASYVHGHLHQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHH 398
P +Y H L Q + D L + + D L + H D L +T H D L Q H
Sbjct: 239 PMTYRHDVLLQTTYRHDVLLQTTYRHDVLLQTTHRYDVLLQTTHRHDVLLQTTYRH 294
>SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 356 YAFSGHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQ 520
Y+ S HS+ + SY ST + T S+ + N S C S T+ Q
Sbjct: 2 YSTSTHSNGTVAQSYSTSTHSNGTVTQSYSTITHSNGTVAQSYCTSTHSHGTVAQ 56
>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
Length = 2009
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 228 APASYVHGHLHQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAIS 392
A Y+H H+ +HL + RA + R I+L+ HRT+H T A S
Sbjct: 894 ATVRYIHPIRHRTLHLPHTPPRAASTPYATARCIYLI--RHRTLHLPHTPPHATS 946
>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 386 YQPSYQISTQNYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQG 523
YQ + S+ +Y P NS G + +GY C K G G
Sbjct: 1123 YQAKARSSSFSYVPRCNSDGSYDDVQCFSGYCFCVDKKGAQKRGYG 1168
>SB_46690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 28.3 bits (60), Expect = 4.8
Identities = 8/32 (25%), Positives = 25/32 (78%)
Frame = -3
Query: 350 METVQKMYSSMETVQKMYSSTETVQQMHSLMK 255
+E +++YS++ + +K++ +++ ++ +HSL+K
Sbjct: 51 IEKAKQVYSTLSSPKKIFIASDNIEVIHSLLK 82
>SB_37316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 377 KSVQKMHSPMETVQKMYSSMETVQKMYSS-TETVQQMHSLMK 255
K V + ++ ++ VQ+MY+ + T MY T+ +QQ+ + K
Sbjct: 58 KDVHRDYNNLQHVQRMYTGITTTYNMYKGRTQGLQQLTTCTK 99
>SB_8242| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=7)
Length = 365
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 377 KSVQKMHSPMETVQKMYSSMETVQKMYSS-TETVQQMHSLMK 255
K V + ++ ++ VQ+MY+ + T MY T+ +QQ+ + K
Sbjct: 99 KDVHRDYNNLQHVQRMYTGITTTYNMYKGRTQGLQQLTTCTK 140
>SB_46215| Best HMM Match : DUF444 (HMM E-Value=0)
Length = 418
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 285 LRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIK 404
LR + + +A HL D + +T FLDT +HH+K
Sbjct: 87 LRDEVQWAELQEQAQHLRDKIEKTP-FLDTYDLRYNHHVK 125
>SB_34601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1391
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -3
Query: 377 KSVQKMHSPMETVQKMYSSMETVQKMYSSTE 285
+++ + +S ET+ ++YS ET+ ++YS E
Sbjct: 213 ETMNEFYSRRETMNELYSRQETMNELYSRRE 243
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +2
Query: 353 DYAFSGHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQGSAG 532
+Y +SG SS + QNYQP +S ++ N + S G S S +G G
Sbjct: 326 NYGYSGSSSTDGNHASSNFYQNYQPNQSSSFNSQPSNYLS--SQTGSTRSQSDLGSPPLG 383
Query: 533 LQYASQGYPA 562
+ + GY A
Sbjct: 384 YKSSQAGYNA 393
>SB_24033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 446
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 354 SDGDCPEDV*LDGDCPEDV*LDGDCPAD 271
+DGD +D DGD +D DGD D
Sbjct: 125 TDGDTEDDTECDGDIEDDTECDGDIEDD 152
>SB_16243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 411 HKTTNQPRIRMAMPALLMSELDIVFVE*NQA 503
H T Q ++ + P + +S+ D++ +E N A
Sbjct: 10 HNTAQQQKVSILKPPIYLSQYDVILIEHNTA 40
>SB_9874| Best HMM Match : Sigma54_activat (HMM E-Value=0)
Length = 314
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 270 HLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIKS-VHKTTNQPRIRMA 446
H ++ R A+HL +H + L+D M + L++ SH ++ V T + A
Sbjct: 54 HCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETA 113
Query: 447 MPALLMSELDIV 482
+ AL D V
Sbjct: 114 VEALRCGAFDYV 125
>SB_8395| Best HMM Match : Arm (HMM E-Value=2.3)
Length = 412
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 231 PASYVHGHLHQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLD 371
PA + G + QAM L S+ +A++LLD R +LL+ R + L+
Sbjct: 206 PAMVLTGGILQAMVLTRSILQAMYLLDVSCRPWYLLEVSCRLWYLLE 252
>SB_32719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = -3
Query: 371 VQKMHSPMETVQKMYSSMETVQKMYSSTETVQQMHSL 261
++KM SP+E +KM + + ++ + S+ +++ SL
Sbjct: 95 IEKMRSPLERTEKMLPVIRSKERSFVSSNIKEKVESL 131
>SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046)
Length = 240
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +3
Query: 231 PASYVHGHLHQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMH--FLDTLQQAISHHIK 404
P SY+ H+H + +L SL ++H+ D + LH + L + H
Sbjct: 166 PYSYLRLHIHDYISILTSLYSSLHIHDFIPIPTTPYSRLHTHTYDSILTNPNPRLHIHTY 225
Query: 405 SVHKTTNQPRIRM 443
TT PR+ M
Sbjct: 226 DSILTTPYPRLHM 238
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 356 YAFSGHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSICGIKPSFS 508
Y+ + S S PSY ++ +Y P + S+ A N A S PS++
Sbjct: 696 YSPASPSYTSASPSYSPASPSYSPTSPSYSPAIPSNSPASPSYSPASPSYT 746
>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 601
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 396 DG**LAEECPENA*SDGDCPEDV*LDGDCPEDV*LDGDC 280
DG + C ++ DG C E +DG C + +DG C
Sbjct: 486 DGPCVDAPCVDSPCVDGSCVESPCVDGPCVDSPCVDGPC 524
>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 513
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 396 DG**LAEECPENA*SDGDCPEDV*LDGDCPEDV*LDGDC 280
DG + C ++ DG C E +DG C + +DG C
Sbjct: 177 DGPCVDAPCVDSPCVDGSCVESPCVDGPCVDSPCVDGPC 215
>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 237 SYVHGHLHQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIK 404
++++G + H+ DS R + H+ DS + H L T H L HI+
Sbjct: 320 THIYGSRRLSTHIFDSPRLSTHIFDSPRLSQHSHIRLPSTQHSHIRLPSTQHSHIR 375
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +3
Query: 246 HGHLHQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIKSVHKTTN 425
H H H ++ LR + HR H HR H SHH + H+
Sbjct: 173 HHHHHHPSTIIIILRHRHRQHYNRHRRHH---HHHRHRHHHHHPNHPYSHHYPNHHRQQQ 229
Query: 426 QPRIR 440
QPR++
Sbjct: 230 QPRLQ 234
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,108,944
Number of Sequences: 59808
Number of extensions: 361985
Number of successful extensions: 1323
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -