Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30241
(577 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens ... 36 0.10
BC071592-1|AAH71592.1| 1076|Homo sapiens FARP1 protein protein. 31 2.9
BC041595-1|AAH41595.1| 1045|Homo sapiens FERM, RhoGEF (ARHGEF) a... 31 2.9
AL161896-1|CAI12946.1| 1045|Homo sapiens FERM, RhoGEF (ARHGEF) a... 31 2.9
AL137249-8|CAI39458.1| 1045|Homo sapiens FERM, RhoGEF (ARHGEF) a... 31 2.9
AL136300-3|CAI10953.1| 1045|Homo sapiens FERM, RhoGEF (ARHGEF) a... 31 2.9
AB008430-1|BAA24267.1| 1045|Homo sapiens CDEP protein. 31 2.9
U93091-1|AAC80227.1| 839|Homo sapiens Toll protein homolog prot... 31 3.8
U88880-1|AAC34135.1| 799|Homo sapiens Toll-like receptor 4 prot... 31 3.8
BC117422-1|AAI17423.1| 839|Homo sapiens toll-like receptor 4 pr... 31 3.8
AL160272-2|CAH72619.1| 799|Homo sapiens toll-like receptor 4 pr... 31 3.8
AL160272-1|CAH72618.1| 839|Homo sapiens toll-like receptor 4 pr... 31 3.8
AF177766-1|AAF07823.1| 752|Homo sapiens human toll-like recepto... 31 3.8
AF177765-1|AAF05316.1| 839|Homo sapiens toll-like receptor 4 pr... 31 3.8
AF172171-1|AAF89753.1| 839|Homo sapiens toll-like receptor 4 pr... 31 3.8
AL137061-1|CAI14398.1| 276|Homo sapiens SRY (sex determining re... 30 6.7
AF107044-1|AAC95381.1| 276|Homo sapiens DNA-binding protein SOX... 30 6.7
>AK128694-1|BAC87575.1| 291|Homo sapiens protein ( Homo sapiens
cDNA FLJ46861 fis, clone UTERU3011092. ).
Length = 291
Score = 35.9 bits (79), Expect = 0.10
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 237 SYVHGHLHQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTLQQAISHHI 401
SYVH H + +H+ + IH +H IH+ +HR + + + HI
Sbjct: 158 SYVHMHAYVCVHMYTCVHMCIHKYTCMHMCIHMYTCIHRCIFIYTYVYICVYIHI 212
>BC071592-1|AAH71592.1| 1076|Homo sapiens FARP1 protein protein.
Length = 1076
Score = 31.1 bits (67), Expect = 2.9
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 333 LLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLMSEL--DIVFVE*NQAL 506
LL LHR MH+ L++ HH S H R +A ++++L ++ +E Q L
Sbjct: 682 LLRPLHRLMHYKQVLERLCKHHPPS-HADFRDCRAALAEITEMVAQLHGTMIKMENFQKL 740
Query: 507 VRWVKDLLG 533
KDL+G
Sbjct: 741 HELKKDLIG 749
>BC041595-1|AAH41595.1| 1045|Homo sapiens FERM, RhoGEF (ARHGEF) and
pleckstrin domain protein 1 (chondrocyte-derived)
protein.
Length = 1045
Score = 31.1 bits (67), Expect = 2.9
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 333 LLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLMSEL--DIVFVE*NQAL 506
LL LHR MH+ L++ HH S H R +A ++++L ++ +E Q L
Sbjct: 682 LLRPLHRLMHYKQVLERLCKHHPPS-HADFRDCRAALAEITEMVAQLHGTMIKMENFQKL 740
Query: 507 VRWVKDLLG 533
KDL+G
Sbjct: 741 HELKKDLIG 749
>AL161896-1|CAI12946.1| 1045|Homo sapiens FERM, RhoGEF (ARHGEF) and
pleckstrin domain protein 1 (chondrocyte-derived)
protein.
Length = 1045
Score = 31.1 bits (67), Expect = 2.9
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 333 LLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLMSEL--DIVFVE*NQAL 506
LL LHR MH+ L++ HH S H R +A ++++L ++ +E Q L
Sbjct: 682 LLRPLHRLMHYKQVLERLCKHHPPS-HADFRDCRAALAEITEMVAQLHGTMIKMENFQKL 740
Query: 507 VRWVKDLLG 533
KDL+G
Sbjct: 741 HELKKDLIG 749
>AL137249-8|CAI39458.1| 1045|Homo sapiens FERM, RhoGEF (ARHGEF) and
pleckstrin domain protein 1 (chondrocyte-derived)
protein.
Length = 1045
Score = 31.1 bits (67), Expect = 2.9
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 333 LLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLMSEL--DIVFVE*NQAL 506
LL LHR MH+ L++ HH S H R +A ++++L ++ +E Q L
Sbjct: 682 LLRPLHRLMHYKQVLERLCKHHPPS-HADFRDCRAALAEITEMVAQLHGTMIKMENFQKL 740
Query: 507 VRWVKDLLG 533
KDL+G
Sbjct: 741 HELKKDLIG 749
>AL136300-3|CAI10953.1| 1045|Homo sapiens FERM, RhoGEF (ARHGEF) and
pleckstrin domain protein 1 (chondrocyte-derived)
protein.
Length = 1045
Score = 31.1 bits (67), Expect = 2.9
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 333 LLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLMSEL--DIVFVE*NQAL 506
LL LHR MH+ L++ HH S H R +A ++++L ++ +E Q L
Sbjct: 682 LLRPLHRLMHYKQVLERLCKHHPPS-HADFRDCRAALAEITEMVAQLHGTMIKMENFQKL 740
Query: 507 VRWVKDLLG 533
KDL+G
Sbjct: 741 HELKKDLIG 749
>AB008430-1|BAA24267.1| 1045|Homo sapiens CDEP protein.
Length = 1045
Score = 31.1 bits (67), Expect = 2.9
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +3
Query: 333 LLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLMSEL--DIVFVE*NQAL 506
LL LHR MH+ L++ HH S H R +A ++++L ++ +E Q L
Sbjct: 682 LLRPLHRLMHYKQVLERLCKHHPPS-HADFRDCRAALAEITEMVAQLHGTMIKMENFQKL 740
Query: 507 VRWVKDLLG 533
KDL+G
Sbjct: 741 HELKKDLIG 749
>U93091-1|AAC80227.1| 839|Homo sapiens Toll protein homolog
protein.
Length = 839
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 137 FHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRSADLSXPNF 6
F ++CL S++VL LNH KQ + FPSS +L+ +F
Sbjct: 538 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 581
>U88880-1|AAC34135.1| 799|Homo sapiens Toll-like receptor 4
protein.
Length = 799
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 137 FHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRSADLSXPNF 6
F ++CL S++VL LNH KQ + FPSS +L+ +F
Sbjct: 498 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 541
>BC117422-1|AAI17423.1| 839|Homo sapiens toll-like receptor 4
protein.
Length = 839
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 137 FHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRSADLSXPNF 6
F ++CL S++VL LNH KQ + FPSS +L+ +F
Sbjct: 538 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 581
>AL160272-2|CAH72619.1| 799|Homo sapiens toll-like receptor 4
protein.
Length = 799
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 137 FHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRSADLSXPNF 6
F ++CL S++VL LNH KQ + FPSS +L+ +F
Sbjct: 498 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 541
>AL160272-1|CAH72618.1| 839|Homo sapiens toll-like receptor 4
protein.
Length = 839
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 137 FHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRSADLSXPNF 6
F ++CL S++VL LNH KQ + FPSS +L+ +F
Sbjct: 538 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 581
>AF177766-1|AAF07823.1| 752|Homo sapiens human toll-like receptor 4
protein.
Length = 752
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 137 FHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRSADLSXPNF 6
F ++CL S++VL LNH KQ + FPSS +L+ +F
Sbjct: 451 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 494
>AF177765-1|AAF05316.1| 839|Homo sapiens toll-like receptor 4
protein.
Length = 839
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 137 FHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRSADLSXPNF 6
F ++CL S++VL LNH KQ + FPSS +L+ +F
Sbjct: 538 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 581
>AF172171-1|AAF89753.1| 839|Homo sapiens toll-like receptor 4
protein.
Length = 839
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -3
Query: 137 FHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRSADLSXPNF 6
F ++CL S++VL LNH KQ + FPSS +L+ +F
Sbjct: 538 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 581
>AL137061-1|CAI14398.1| 276|Homo sapiens SRY (sex determining
region Y)-box 21 protein.
Length = 276
Score = 29.9 bits (64), Expect = 6.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 422 QPATNSHGDASSINVGAGYSICGIKPSFSTMGQGSAGLQYASQ-GYPANG 568
Q A + A++ G+ YS+ + + + S+GL YAS GYP G
Sbjct: 152 QSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAG 201
>AF107044-1|AAC95381.1| 276|Homo sapiens DNA-binding protein SOX21
protein.
Length = 276
Score = 29.9 bits (64), Expect = 6.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 422 QPATNSHGDASSINVGAGYSICGIKPSFSTMGQGSAGLQYASQ-GYPANG 568
Q A + A++ G+ YS+ + + + S+GL YAS GYP G
Sbjct: 152 QSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAG 201
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,709,969
Number of Sequences: 237096
Number of extensions: 1642308
Number of successful extensions: 3999
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3959
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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