Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30241
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    33   0.15 
Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical pr...    31   0.59 
Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion transpo...    30   1.4  
Z83116-4|CAB05562.1|  287|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U97549-1|AAB52850.1|  128|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical p...    28   5.5  
U12964-10|AAK93849.2|  140|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z74026-2|CAD54122.1|  588|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    27   9.5  
AC006678-2|AAK68392.2|  315|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC006678-1|AAU20842.1|  337|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +2

Query: 359 AFSGHSSAS-YQPSYQISTQNYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQGSAGL 535
           ++SG SS+S Y  S   S  +Y P+ +S+ D +S +  + YS     PS+S+ G   +  
Sbjct: 236 SYSGSSSSSSYSSSDSSSYSSYTPSISSNSDYTSYS-PSYYSYSSYSPSYSSYGSSYSPS 294

Query: 536 QYASQ--GYPANGH 571
            Y++   GY   G+
Sbjct: 295 YYSNYYGGYNNYGY 308


>Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical
           protein K07G5.1 protein.
          Length = 998

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 261 QAMHLLDSLRRAIHLLDSLH-RAIHLLDSLHRTMHFLDTLQQAISHH 398
           +A+H++      IHL D +H + I++  S+H  +H    L  A+ H+
Sbjct: 80  KAIHVISEEELVIHLDDGVHKKKINIKCSIHPAVHLARQLLSAVKHY 126


>Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical
           protein K12G11.1 protein.
          Length = 749

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = +1

Query: 232 LQAMYMDTFIKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWTLFSKLSAIISNQY 411
           LQ M+   F  L   W VS   +  W VS    I   VS GL I    F+  + I+  QY
Sbjct: 482 LQGMFRK-FADLIDLWKVSKIDFTIWVVSCVSTILLDVSTGL-IISVCFALFTTILREQY 539

Query: 412 TK 417
            K
Sbjct: 540 PK 541


>AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion
           transporter SULP-4 protein.
          Length = 749

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = +1

Query: 232 LQAMYMDTFIKLCICWTVSVELYIFWTVSIELYIFWTVSIGLCIFWTLFSKLSAIISNQY 411
           LQ M+   F  L   W VS   +  W VS    I   VS GL I    F+  + I+  QY
Sbjct: 482 LQGMFRK-FADLIDLWKVSKIDFTIWVVSCVSTILLDVSTGL-IISVCFALFTTILREQY 539

Query: 412 TK 417
            K
Sbjct: 540 PK 541


>Z83116-4|CAB05562.1|  287|Caenorhabditis elegans Hypothetical
           protein M01B2.4 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
 Frame = +1

Query: 238 AMYMDTFIKLCICW----TVSVEL-YIFWTVSIELYIFWTVSIGLCIFWTLFSKLSA--I 396
           A +++ F+ L I +    TV+  + +I+W    +L  F+T+S+ +CI + L   LSA  I
Sbjct: 19  AFFLNGFLLLSIFYYKKITVNPSMTFIYWKFGADL--FYTLSLSICISYYLLMSLSANFI 76

Query: 397 ISN 405
           I N
Sbjct: 77  IKN 79


>Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical
           protein ZC84.3 protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 353 PMETVQKMYSSMETVQKMYSSTETVQQMHSLMKVSMYIACRGF 225
           P +T++K+ +  + +QKM SS    +Q  ++  + M I   GF
Sbjct: 587 PPDTLEKIQNVQDLLQKMRSSENADEQESAISSIYMMICDGGF 629


>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +2

Query: 359 AFSGHSSASY-QPS---YQISTQNYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQGS 526
           A + +S A+Y QP    YQ +T  Y P          + +   +S     PS ST   G 
Sbjct: 562 AGAANSGAAYHQPYGNVYQHNTAAY-PVWGGLDAQGHMAMDTNWSQNAATPSTSTSSGGG 620

Query: 527 AGLQYASQGYPANGH 571
            G Q+  Q Y +N H
Sbjct: 621 GGQQWQQQSYGSNQH 635


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +2

Query: 359 AFSGHSSASY-QPS---YQISTQNYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQGS 526
           A + +S A+Y QP    YQ +T  Y P          + +   +S     PS ST   G 
Sbjct: 670 AGAANSGAAYHQPYGNVYQHNTAAY-PVWGGLDAQGHMAMDTNWSQNAATPSTSTSSGGG 728

Query: 527 AGLQYASQGYPANGH 571
            G Q+  Q Y +N H
Sbjct: 729 GGQQWQQQSYGSNQH 743


>Z68118-5|CAA92185.1|  245|Caenorhabditis elegans Hypothetical
           protein R01E6.5 protein.
          Length = 245

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 368 GHSSASYQPSYQISTQNYQPATNSHGDASS 457
           GH S SYQPSY      Y     SH   S+
Sbjct: 197 GHDSESYQPSYYQPKPKYYGGHQSHYQPSA 226


>U97549-1|AAB52850.1|  128|Caenorhabditis elegans Hypothetical
           protein F15A8.4 protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
 Frame = -3

Query: 320 METVQKMYSSTETVQQMHSL--------MKVSMYIACRGFSFILYIVGSF 195
           M T  ++ ++ E  +Q H L        + +S Y+AC   +FILYI+ +F
Sbjct: 1   MSTTARVQAAQEIREQQHRLRCAVKTTVVIISAYLACNLVNFILYILETF 50


>U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical
           protein C25B8.7 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 8/37 (21%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 274 CWTVSVELYI-FWTVSIELYIFWTVSIGLCIFWTLFS 381
           CW    ++++ ++   +  Y+ W +SIG   ++ ++S
Sbjct: 156 CWPFKYDIWMSYFRAKLFCYLSWIISIGFATYYWMYS 192


>U12964-10|AAK93849.2|  140|Caenorhabditis elegans Hypothetical
           protein F26F4.9a protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 350 METVQKMYSSMETVQKMYSSTETVQQMHSLMKVSMYIACRGFSFILYIVGSFC 192
           +ET ++     E  +K     E  +++ +L+K  ++IA + +SF L    S C
Sbjct: 85  IETSKREEKLKEEAEKRQREYEEQEKVVTLIKYKIFIASKSYSFSLKQFSSIC 137


>Z95621-1|CAB09130.1|  357|Caenorhabditis elegans Hypothetical
           protein VC27A7L.1 protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 277 WTVSVELYIFW-TVSIELYIFWTVSIGLCIFWTLFSKLSAIISNQYTK 417
           W  S +L +    V I +   WT+   L   WT+ SKL  +  ++ TK
Sbjct: 237 WGASTKLIVSTGIVIISIISCWTIYFCLWTGWTIHSKLKVVDMSKNTK 284


>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 386 SLLKSVQKMHSPMETVQKMYSSMETVQKM 300
           +LLK V KM  P+E +QK+ S  E  +++
Sbjct: 209 NLLKDVDKMSEPLEQLQKLPSVFEPFKEV 237


>Z74026-2|CAD54122.1|  588|Caenorhabditis elegans Hypothetical
           protein B0240.4 protein.
          Length = 588

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 334 FWTVSIGLCIFWTLFSKLSAIISNQYTKLPTSHEF 438
           F  V  GLC     +SK+S  I NQ    P S  F
Sbjct: 280 FHVVLFGLCFTQQFYSKISMKIVNQIVMKPISFPF 314


>AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4a protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 250 DTFIKLCICWTVSVELYIFWTVSIELYIFW 339
           D FI +C    + V++Y  + VS +L + W
Sbjct: 78  DVFISICYIAIMCVQVYTDYFVSFKLLVLW 107


>AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4b protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 250 DTFIKLCICWTVSVELYIFWTVSIELYIFW 339
           D FI +C    + V++Y  + VS +L + W
Sbjct: 78  DVFISICYIAIMCVQVYTDYFVSFKLLVLW 107


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = +2

Query: 359  AFSGHSSASYQPSYQISTQNYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQGSAG 532
            AFS       +P  Q S  +  P+  S G  +     A  +  GIKP       GSAG
Sbjct: 1243 AFSDTQQMMRKPIRQSSQTSAGPSQGSSGGLAGAVASAAAASGGIKPVAKKSSAGSAG 1300


>AC006678-2|AAK68392.2|  315|Caenorhabditis elegans Hypothetical
           protein R05G9.2a protein.
          Length = 315

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 325 LYIFWTVSIGLCIFWTLFSKLSAIISNQYT 414
           L+I W + IGLC+++ + +     I + +T
Sbjct: 201 LFILWAILIGLCLYYQVINDFWLSILHAFT 230


>AC006678-1|AAU20842.1|  337|Caenorhabditis elegans Hypothetical
           protein R05G9.2b protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 325 LYIFWTVSIGLCIFWTLFSKLSAIISNQYT 414
           L+I W + IGLC+++ + +     I + +T
Sbjct: 223 LFILWAILIGLCLYYQVINDFWLSILHAFT 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,559,214
Number of Sequences: 27780
Number of extensions: 264151
Number of successful extensions: 856
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)