Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30241
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    30   1.3  
At5g41390.1 68418.m05029 hypothetical protein contains 1 predict...    28   5.1  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    27   6.8  
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ...    27   6.8  
At4g18150.1 68417.m02697 hypothetical protein                          27   9.0  
At2g22530.1 68415.m02672 phosphatidylinositolglycan-related simi...    27   9.0  
At2g14830.1 68415.m01680 expressed protein contains Pfam profile...    27   9.0  

>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 164 YQSDECNREFHFRCLVSIRVLLMKLNHYTRVDKQLEKIFPSSDRS 30
           Y  D+C    H RCL+   + + K  H    +K+   I P++ RS
Sbjct: 574 YACDDCCTTLHVRCLLGEDMYMSKPGHTIMNNKREVHILPNNTRS 618


>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
           transmembrane domain;
          Length = 297

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = +3

Query: 294 AIHL---LDSLHRAIHLLDSLHRTMHFLDTLQQAISHHIKSVHKTTNQPRIRMAMPALLM 464
           AIHL   +  LHRAI  L ++HR +H      Q I    K+V++  N  RI++ + +L+ 
Sbjct: 202 AIHLPVTVTLLHRAIRQLRAIHRDIH----QHQDILQSNKNVNQNLNL-RIKVVISSLVC 256

Query: 465 S 467
           S
Sbjct: 257 S 257


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
           domain-containing protein similar to eukaryotic protein
           synthesis initiation factor [Homo sapiens] GI:3941724;
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 1544

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 356 SPMETVQKMYSSMETVQKMYSSTET 282
           SP+ETV    SS+ETV  + SS ET
Sbjct: 396 SPVETVPLAKSSVETVPPVKSSVET 420


>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
           PF00069: Protein kinase domain
          Length = 710

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 416 NYQPATNSHGDASSINVGAGYSICGIKPSFSTMGQGSAGLQY 541
           N Q  +NS     S   G GY+  G  P  + MG G     Y
Sbjct: 302 NSQQQSNSGNSFGSQRGGGGYTRSGSAPDSAVMGSGQTHFTY 343


>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 389 QPSYQI--STQNYQPATNSHGDA 451
           Q SYQI  STQNY  AT+S  DA
Sbjct: 440 QVSYQIDSSTQNYNSATDSKTDA 462


>At2g22530.1 68415.m02672 phosphatidylinositolglycan-related similar
           to Pig-o [Mus musculus] GI:8099973
          Length = 897

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 384 AISHHIKSVHKTTNQPRIRMAMPALLMSELDIVFVE*NQALV 509
           AI +H K+   T   PR++  +   +   LD+ F    QAL+
Sbjct: 114 AIGYHAKAAPPTVTMPRLKAMVSGAIGGFLDVAFNFNTQALL 155


>At2g14830.1 68415.m01680 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 454

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/66 (24%), Positives = 34/66 (51%)
 Frame = +3

Query: 198 RADDVKDKREAPASYVHGHLHQAMHLLDSLRRAIHLLDSLHRAIHLLDSLHRTMHFLDTL 377
           R + +K+K+ A +S++   + Q + + +   RA+H    L    +L+   H  +HF D +
Sbjct: 94  RLNLLKNKKYAISSHLRNDIAQLLRIGER-DRALHRAQQLFLDENLMSLYHLLLHFSDII 152

Query: 378 QQAISH 395
              +S+
Sbjct: 153 LLNLSY 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,971,180
Number of Sequences: 28952
Number of extensions: 245913
Number of successful extensions: 817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)