Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30239
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847...    33   0.22 
12_02_0659 - 21612325-21612328,21613164-21613199,21613279-216133...    30   1.6  
01_06_0145 + 26964898-26965169,26965319-26965400,26966131-269663...    29   2.7  
06_03_1481 - 30436904-30437059,30437150-30437221,30437559-304379...    29   4.8  

>04_03_0977 +
           21381857-21383757,21384299-21384458,21384669-21384717,
           21385117-21385169
          Length = 720

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +1

Query: 22  SCVSLLQTQTRARARP*EADSQTIFRLDKDGNYTNERITG---IQKNAEGQKWNDPHL*N 192
           SC+ + + QT+A+  P  +D +       D +  NE+I     + + AE  K +D  +  
Sbjct: 290 SCIVIDEEQTKAKYLPVPSDDKVSDEKPDDSSVLNEKIEDDETLAEKAEDDKTSDERVPG 349

Query: 193 VRGLVR*DVQNYY-YCS 240
           V+  +R D  N   YCS
Sbjct: 350 VKNNLRDDCNNLLSYCS 366


>12_02_0659 -
           21612325-21612328,21613164-21613199,21613279-21613394,
           21613983-21614567
          Length = 246

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 5   FRDIFSAVYHYYKHRRV-PVPGHEKLTVKQYFDLIRMVIIQMKESPEYKKMQK 160
           FR+ F  ++ YY+H  +    G +K  +  YF   +   +++ E  E +K++K
Sbjct: 46  FRNFFEIIFPYYEHEEIDSASGEKKKVLPCYFLQFQHNCMEVPEVHEREKLEK 98


>01_06_0145 +
           26964898-26965169,26965319-26965400,26966131-26966345,
           26966912-26966975,26967336-26967440
          Length = 245

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -1

Query: 306 AFFGIKVHTLDYIGGTQSISPSRTVIIILNILPNKTTYISQVRVVPFLAFCIFLYSGDSF 127
           AF G  + TL  +  + SISP      I +  PN++     VRV   ++     YSGD+ 
Sbjct: 107 AFEGKSLETLPEVYASDSISPDIKPPPISDGTPNESVADVFVRVTQLMSILETQYSGDTV 166

Query: 126 ICI 118
           + +
Sbjct: 167 VIV 169


>06_03_1481 -
           30436904-30437059,30437150-30437221,30437559-30437902,
           30438014-30438137,30438244-30438386,30438792-30438927,
           30439469-30439818,30440458-30440542
          Length = 469

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 339 YISITEFYVKNAFFGIKVHTLDYIGGTQSISPSR 238
           Y++    YVK+  +G  V  L+ + G +++ PSR
Sbjct: 276 YVATGHLYVKSDVYGFGVVLLEMLSGLRALDPSR 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,161,131
Number of Sequences: 37544
Number of extensions: 380168
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)