Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30239
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 218 TSYRTRPRTFHK*GSFHFWPSAFFCIPVILSFV 120
           T+Y   P TFH    F  +  +FF +PV+L+FV
Sbjct: 6   TNYSV-PSTFHGVPKFINYQFSFFTVPVLLAFV 37


>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 405 RPTYFCHEAVMRFG 446
           RPTYFC    MRFG
Sbjct: 266 RPTYFCDRCPMRFG 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,843
Number of Sequences: 27780
Number of extensions: 328159
Number of successful extensions: 642
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)