Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30239
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05380.1 68414.m00546 PHD finger transcription factor, putative     29   4.0  
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03...    28   5.3  
At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar ...    28   7.0  
At2g03040.1 68415.m00257 transmembrane protein-related low simil...    27   9.2  
At1g52155.1 68414.m05886 expressed protein                             27   9.2  
At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 / ...    27   9.2  

>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
          Length = 600

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 13  YILSCVSLLQTQTRARARP*EADSQTIFRLDKDGNYTNERITGI 144
           Y+ S  SLLQ Q RA     +A +  + ++D DG+  N+   GI
Sbjct: 49  YLESGASLLQCQVRAWNMQKDATNLALHQVDTDGDDPNDDACGI 92


>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
           PF03138: Plant protein family. The function of this
           family of plant proteins is unknown;
          Length = 698

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -1

Query: 306 AFFGIKVHTLDYIGGTQSISPSRTVIIILNILPN---KTTYISQVRVVPFLAFCIFLYSG 136
           A  G K  T  Y+ G+Q    S  ++ +  + PN   K T ++   + PF  F   L + 
Sbjct: 542 AGLGFKRKTYIYLAGSQIYGGSSRMLPLTRLYPNIATKETLLTPQELAPFKNFSSQLAAL 601

Query: 135 DSFICI 118
           D   CI
Sbjct: 602 DFIACI 607


>At2g03290.1 68415.m00284 emp24/gp25L/p24 family protein similar to
           SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Homo sapiens};
           contains Pfam profile PF01105: emp24/gp25L/p24 family
          Length = 170

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 228 IILNILPNKTTYISQVRVVPFLAFCIFLYSGDSFI-CIITILIKSKYCLTVSFSW 67
           II+ ++P +   + +   V    F    Y   S++ CI  I  K +  LT+ F W
Sbjct: 24  IIVKVMPPQGKNLHEADKVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDW 78


>At2g03040.1 68415.m00257 transmembrane protein-related low
           similarity to SP|Q28735|TM21_RABIT Transmembrane protein
           Tmp21 precursor (21 kDa Transmembrane trafficking
           protein) (Integral membrane protein p23) {Oryctolagus
           cuniculus}
          Length = 166

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -1

Query: 228 IILNILPNKTTYISQVRVVPFLAFCIFLYSGDSFI-CIITILIKSKYCLTVSFSW 67
           II+ ++P +   + +   V    F    Y   S++ CI  I  K +  LT+ F W
Sbjct: 67  IIVKVMPPQGKNLHEADNVEAGQFSFTAYENGSYVACITAIDYKPETTLTIDFDW 121


>At1g52155.1 68414.m05886 expressed protein
          Length = 235

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -1

Query: 267 GGTQSISPSRTVIIILNILPNKTTYISQVRVVPFLAFCIFLYSGDSF 127
           G  Q ++ + TVI  +N+  +   Y  ++ +  +  FCIFLY G +F
Sbjct: 120 GAMQIVAMAETVIY-MNMDNSSQNYWLRLLIREWAQFCIFLYIGWTF 165


>At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 /
           phosphoribosyl diphosphate synthetase 2 (PRS2) identical
           to SP:Q42583 from [Arabidopsis thaliana]; strong
           similarity to phosphoribosyl diphosphate synthetase 1
           (ribose-phosphate pyrophosphokinase 1 (PRS I)
           [Arabidopsis thaliana] GI:633140, SP|Q42581
          Length = 400

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 149 FCIPVILSFV*LPSLSSRNIV*LSAS-HGLARAR 51
           +C PVIL ++   S+SS ++V +S    G+ARAR
Sbjct: 232 YCQPVILDYLASKSISSEDLVVVSPDVGGVARAR 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,231,690
Number of Sequences: 28952
Number of extensions: 304666
Number of successful extensions: 568
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)