Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30238
(672 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 159 6e-38
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 148 1e-34
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 146 6e-34
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 143 3e-33
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 130 2e-29
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 124 3e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 111 2e-23
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 107 2e-22
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 99 8e-20
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 98 1e-19
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 93 4e-18
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 74 4e-12
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 63 5e-09
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 58 2e-07
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 56 8e-07
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 55 2e-06
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 54 4e-06
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 53 7e-06
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 52 1e-05
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 52 1e-05
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 51 2e-05
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 51 2e-05
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 50 4e-05
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 49 9e-05
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 48 3e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 47 4e-04
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 47 5e-04
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 47 5e-04
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 46 0.001
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 43 0.006
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 42 0.014
UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1; ... 41 0.024
UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1; ... 41 0.031
UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransfera... 38 0.17
UniRef50_UPI0000DB7528 Cluster: PREDICTED: similar to Homeobox p... 38 0.22
UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1; ... 38 0.29
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 38 0.29
UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precurs... 37 0.39
UniRef50_Q73TJ6 Cluster: Putative uncharacterized protein; n=1; ... 37 0.51
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 37 0.51
UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens "Keratin... 36 0.89
UniRef50_Q4QD98 Cluster: Putative uncharacterized protein; n=3; ... 36 0.89
UniRef50_Q2J9B3 Cluster: Two component transcriptional regulator... 36 1.2
UniRef50_A7DDI7 Cluster: Putative uncharacterized protein; n=2; ... 36 1.2
UniRef50_Q9VVJ8 Cluster: CG6064-PA; n=1; Drosophila melanogaster... 34 3.6
UniRef50_UPI0000D9DD80 Cluster: PREDICTED: hypothetical protein;... 33 4.8
UniRef50_Q9D9Z9 Cluster: Adult male testis cDNA, RIKEN full-leng... 33 4.8
UniRef50_Q2CHG7 Cluster: Parallel beta-helix repeat protein; n=4... 33 4.8
UniRef50_A6FX03 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_Q84LE0 Cluster: Phytocyanin protein, PUP2; n=3; Arabido... 33 4.8
UniRef50_Q22P43 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 33 4.8
UniRef50_UPI0000E4A3FA Cluster: PREDICTED: similar to RP11-575L7... 33 6.3
UniRef50_UPI0000E4629E Cluster: PREDICTED: similar to KIF27B; n=... 33 6.3
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 6.3
UniRef50_Q73XW5 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_Q3JG68 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_Q093W8 Cluster: Tetratricopeptide repeat family; n=2; C... 33 6.3
UniRef50_A6FUS7 Cluster: Putative uncharacterized protein; n=1; ... 33 6.3
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 33 6.3
UniRef50_Q64298 Cluster: Sperm mitochondrial-associated cysteine... 33 6.3
UniRef50_Q96HB5 Cluster: Coiled-coil domain-containing protein 1... 33 6.3
UniRef50_UPI00005A5D2B Cluster: PREDICTED: similar to Protein CX... 33 8.3
UniRef50_UPI000023C9CD Cluster: hypothetical protein FG00511.1; ... 33 8.3
UniRef50_Q5NW57 Cluster: Putative uncharacterized protein; n=1; ... 33 8.3
UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: V... 33 8.3
UniRef50_Q3W5Q3 Cluster: Zeta toxin; n=1; Frankia sp. EAN1pec|Re... 33 8.3
UniRef50_Q6QJ04 Cluster: Cys-rich cocoon protein; n=1; Theromyzo... 33 8.3
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 159 bits (386), Expect = 6e-38
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
VP+LVTHDGRTIRYPDPLI NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT+
Sbjct: 136 VPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTV 195
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
V+RERHPGSFDIVHIKDS GH FA
Sbjct: 196 VNRERHPGSFDIVHIKDSQGHVFA 219
Score = 114 bits (275), Expect = 2e-24
Identities = 49/65 (75%), Positives = 57/65 (87%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 70 VKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKT 129
Query: 241 ATGPK 255
G K
Sbjct: 130 QLGAK 134
Score = 71.7 bits (168), Expect = 1e-11
Identities = 32/40 (80%), Positives = 37/40 (92%)
Frame = +2
Query: 509 TRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
TRL NVFIIGKG K YISLP+GKG++L+IAEERDKR+AAK
Sbjct: 220 TRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKRLAAK 259
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 148 bits (359), Expect = 1e-34
Identities = 62/87 (71%), Positives = 77/87 (88%)
Frame = +3
Query: 249 T*NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 428
T +P+LVTHD RTIRYPDPLIKVND+IQ+D+ T KI DFIKF++GNLCM+TGG NLGR+
Sbjct: 133 TKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRI 192
Query: 429 GTIVSRERHPGSFDIVHIKDSTGHTFA 509
G I +RERHPGSFD+VH+KD+ G++FA
Sbjct: 193 GVITNRERHPGSFDVVHVKDANGNSFA 219
Score = 117 bits (282), Expect = 2e-25
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = +1
Query: 37 EKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 216
+K+ FIK+DGKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKY
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKY 121
Query: 217 KLCKVKRVATGPK 255
KLCKV+++ G K
Sbjct: 122 KLCKVRKIFVGTK 134
Score = 75.8 bits (178), Expect = 9e-13
Identities = 34/46 (73%), Positives = 40/46 (86%)
Frame = +2
Query: 491 HGTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
+G TRL+N+F+IGKG K +ISLPRGKGIRLTIAEERDKR+AAK
Sbjct: 214 NGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAK 259
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 146 bits (353), Expect = 6e-34
Identities = 60/87 (68%), Positives = 77/87 (88%)
Frame = +3
Query: 249 T*NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 428
T +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N+CM+TGG NLGR+
Sbjct: 165 TKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSNMCMVTGGANLGRI 224
Query: 429 GTIVSRERHPGSFDIVHIKDSTGHTFA 509
G I +RERHPGSFD+VH+KDSTG++FA
Sbjct: 225 GVITNRERHPGSFDVVHVKDSTGNSFA 251
Score = 96.7 bits (230), Expect(2) = 2e-20
Identities = 44/59 (74%), Positives = 50/59 (84%)
Frame = +1
Query: 37 EKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 213
+K+ FIK+DGKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 62 KKICMQRFIKIDGKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 74.9 bits (176), Expect = 2e-12
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +2
Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
G TRL+N+F+IGKG K ++SLPRGKGIRLTIAEERDKR+AAK
Sbjct: 247 GNSFATRLSNIFVIGKGNKPWVSLPRGKGIRLTIAEERDKRLAAK 291
Score = 25.4 bits (53), Expect(2) = 2e-20
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 211 KYKLCKVKRVATGPK 255
+YKLCKVK++ G K
Sbjct: 152 QYKLCKVKKILIGTK 166
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 143 bits (347), Expect = 3e-33
Identities = 59/87 (67%), Positives = 75/87 (86%)
Frame = +3
Query: 249 T*NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 428
T +P+LVTHD RTIRYPDPLIK+ND+IQ+D+ T KI DF KF++GNLCM+TGG NLGR+
Sbjct: 105 TKGIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFFKFDTGNLCMVTGGTNLGRI 164
Query: 429 GTIVSRERHPGSFDIVHIKDSTGHTFA 509
G I +RE HPGSFD+VH+KD+ G++FA
Sbjct: 165 GVITNRENHPGSFDVVHVKDANGNSFA 191
Score = 55.6 bits (128), Expect = 1e-06
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +2
Query: 491 HGTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDK 613
+G TRL+N+F+IGKG +ISLP GKGIR TIAEE+ +
Sbjct: 186 NGNSFATRLSNIFVIGKGNIPWISLPHGKGIRFTIAEEKKR 226
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = +1
Query: 163 DVKGRFTIHRITPEEAKYKLCKVKRVATGPK 255
D KGRF +HRITPEEAKYKL KV+++ G K
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTK 106
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 130 bits (315), Expect = 2e-29
Identities = 56/84 (66%), Positives = 71/84 (84%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
+PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG I
Sbjct: 136 IPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVI 195
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
+RE+H GSF+ +HI+DSTGH FA
Sbjct: 196 KNREKHKGSFETIHIQDSTGHEFA 219
Score = 103 bits (246), Expect = 5e-21
Identities = 47/65 (72%), Positives = 53/65 (81%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ +
Sbjct: 70 IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129
Query: 241 ATGPK 255
G K
Sbjct: 130 QFGQK 134
Score = 60.9 bits (141), Expect = 3e-08
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +2
Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
G TRL NV+ IGKGTK ++SLP+GKGI+LTI EE KR+A++
Sbjct: 215 GHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQ 259
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 124 bits (298), Expect = 3e-27
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
+PY+VTHDGRTIRYP P ++ ND+I+L++ T KI+DF+KF+ GN M+ GG +GRVG I
Sbjct: 136 IPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVGVI 195
Query: 438 VSRERHPGSFDIVHIKDSTGHTF 506
V RE HPGSF+IVHIKD+ G+TF
Sbjct: 196 VKREVHPGSFEIVHIKDAKGNTF 218
Score = 83.4 bits (197), Expect = 4e-15
Identities = 36/66 (54%), Positives = 49/66 (74%)
Frame = +1
Query: 52 NAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 231
N IK+DGK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+
Sbjct: 67 NRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKI 126
Query: 232 KRVATG 249
++ G
Sbjct: 127 EKRVLG 132
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +2
Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRI 619
G TRLNNVF+IGKGT+ ++LP KGI+ + ++ ++ I
Sbjct: 215 GNTFTTRLNNVFVIGKGTETLVNLPLDKGIKKPLLQQVNETI 256
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 111 bits (266), Expect = 2e-23
Identities = 48/88 (54%), Positives = 67/88 (76%)
Frame = +3
Query: 246 RT*NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 425
R +P+LV HD T+R+PD LIKVND+IQ+D+ T KI +KF++GNLC++TGG N GR
Sbjct: 142 RAKGIPHLVIHDIHTVRHPDSLIKVNDTIQIDLETGKITA-LKFDTGNLCLVTGGGNWGR 200
Query: 426 VGTIVSRERHPGSFDIVHIKDSTGHTFA 509
+G I +RERHP SFD H+KD+ ++F+
Sbjct: 201 IGVITNRERHPVSFDTFHVKDANSNSFS 228
Score = 85.0 bits (201), Expect = 1e-15
Identities = 37/61 (60%), Positives = 46/61 (75%)
Frame = +1
Query: 58 FIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 237
FIKVDGK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK+++
Sbjct: 79 FIKVDGKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRK 138
Query: 238 V 240
+
Sbjct: 139 I 139
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 107 bits (258), Expect = 2e-22
Identities = 45/84 (53%), Positives = 61/84 (72%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
+PY+VTHD RTIR+P+P IK+ D+++ D+ KI +F ESGN+C I G N+GRVG I
Sbjct: 248 IPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGII 307
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
E+H GSFDI H+KD+ G+ FA
Sbjct: 308 QHIEKHQGSFDICHVKDAKGNAFA 331
Score = 83.4 bits (197), Expect = 4e-15
Identities = 38/62 (61%), Positives = 45/62 (72%)
Frame = +1
Query: 67 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 246
VDGKVR D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A
Sbjct: 184 VDGKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAI 243
Query: 247 GP 252
GP
Sbjct: 244 GP 245
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +2
Query: 473 CAHQGLHGTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIA 622
C + G TRL N+F++G+G K++I LP G G+R TI EER ++ +
Sbjct: 320 CHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEERKRKFS 369
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 99.1 bits (236), Expect = 8e-20
Identities = 42/84 (50%), Positives = 63/84 (75%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
+P++VTHDGRTI Y DP ++V+D+++ +I T ++ IKF+ G++ M+T G N+GRVGTI
Sbjct: 150 IPHVVTHDGRTISYVDPSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGTI 209
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
E+ SFDIVH+KD++G FA
Sbjct: 210 QKIEKQMASFDIVHLKDTSGAVFA 233
Score = 83.4 bits (197), Expect = 4e-15
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
+KVDGKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V +
Sbjct: 84 VKVDGKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQF 143
Query: 241 ATGPK 255
G K
Sbjct: 144 KIGAK 148
Score = 34.3 bits (75), Expect = 2.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAE 601
G TR+ NVF+IG+ ISLP +G+R +I E
Sbjct: 229 GAVFATRIMNVFVIGENEHPLISLPAREGVRPSILE 264
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 98.3 bits (234), Expect = 1e-19
Identities = 43/84 (51%), Positives = 60/84 (71%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
+PY+VTHDGRTIR+P+ LIK NDSI LD+ K++DFIKF G+LC++ G N+GR+G
Sbjct: 136 IPYIVTHDGRTIRFPNLLIKSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIGVF 195
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
++ GS IV +KD G +F+
Sbjct: 196 INTIGGQGSDSIVCLKDFNGSSFS 219
Score = 81.0 bits (191), Expect = 2e-14
Identities = 37/65 (56%), Positives = 48/65 (73%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
I VDGKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV
Sbjct: 70 IYVDGKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRV 129
Query: 241 ATGPK 255
+ G K
Sbjct: 130 SIGSK 134
Score = 45.2 bits (102), Expect = 0.001
Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = +2
Query: 491 HGTHLRTRLNNVFIIGKGTKAYISLPRGKGIR-LTIAEERD 610
+G+ T+ N+F+IGKGTK++ISLPR +G+R LT + E D
Sbjct: 214 NGSSFSTQTKNLFVIGKGTKSFISLPRFRGLRTLTKSLEHD 254
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 93.5 bits (222), Expect = 4e-18
Identities = 42/87 (48%), Positives = 55/87 (63%)
Frame = +3
Query: 249 T*NVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRV 428
T VP VTHDG IRYPDP + D+I ++ K +D IK G ++TGG N GR+
Sbjct: 130 TGRVPVAVTHDGHRIRYPDPHTSIGDTIVYNVKEKKCVDLIKNRQGKAVIVTGGANRGRI 189
Query: 429 GTIVSRERHPGSFDIVHIKDSTGHTFA 509
G IV E HPG+F+I H+KD++G FA
Sbjct: 190 GEIVKVECHPGAFNIAHLKDASGAEFA 216
Score = 70.9 bits (166), Expect = 3e-11
Identities = 35/73 (47%), Positives = 44/73 (60%)
Frame = +1
Query: 28 RSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEE 207
R E + + VD R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ E
Sbjct: 56 REGEMILRQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAE 115
Query: 208 AKYKLCKVKRVAT 246
A+ KL KV + T
Sbjct: 116 AQIKLMKVVNLYT 128
Score = 38.7 bits (86), Expect = 0.13
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 494 GTHLRTRLNNVFIIGKG-TKAYISLPRGKGIRLTIAEERDKRIAA 625
G TR N+F+IGK +++P+ +G+R+ + +ER++R+ A
Sbjct: 212 GAEFATRAANIFVIGKDLNNLQVTVPKQQGLRMNVIQEREERLIA 256
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 73.7 bits (173), Expect = 4e-12
Identities = 33/59 (55%), Positives = 45/59 (76%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 237
IKV+G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 70 IKVNGRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTK 128
Score = 46.4 bits (105), Expect = 6e-04
Identities = 23/84 (27%), Positives = 48/84 (57%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
+PY+V+ G +IR+ DP I + +I++ T+K++++I + ++ G+ GRVG +
Sbjct: 135 IPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVG-V 193
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
++ G + + D G+TF+
Sbjct: 194 INTISTQGKETVYGMTDFAGNTFS 217
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 63.3 bits (147), Expect = 5e-09
Identities = 29/74 (39%), Positives = 48/74 (64%)
Frame = +1
Query: 25 NRSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 204
+R +++ N+ + VDG+V D +P GFMD++ I KT E++R++ D KGR +++I E
Sbjct: 59 SREAKRIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--E 116
Query: 205 EAKYKLCKVKRVAT 246
E KLCK+ +T
Sbjct: 117 ENDSKLCKIVNKST 130
Score = 37.5 bits (83), Expect = 0.29
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 276 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
HDG+ + + V D I L + +I + + + G +ITGG++ G +GT+
Sbjct: 141 HDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTV 194
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 58.0 bits (134), Expect = 2e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +1
Query: 28 RSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEE 207
R K+ I VDG VR +P +P G MDVV I +T + +R++ + R + I+ EE
Sbjct: 63 REARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEE 122
Query: 208 AKYKLCKVK 234
A+ K+C++K
Sbjct: 123 ARVKVCRIK 131
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 56.0 bits (129), Expect = 8e-07
Identities = 26/70 (37%), Positives = 40/70 (57%)
Frame = +1
Query: 22 ENRSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITP 201
+ R ++ NN +KVDG++ D +P GFMDV+SI+ + ++YD KG+ I + P
Sbjct: 54 KEREITRILNNNMVKVDGRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAP 113
Query: 202 EEAKYKLCKV 231
KL KV
Sbjct: 114 GNKGLKLFKV 123
Score = 37.9 bits (84), Expect = 0.22
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 276 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 449
HDG+TI I +D + + I +I + +K G+ ITGG ++G + TI S E
Sbjct: 139 HDGKTIVTDRKDINTSDVLLMKIPDLEIENVLKIAEGDKVFITGGSHVGELATIKSIE 196
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/59 (42%), Positives = 35/59 (59%)
Frame = +1
Query: 58 FIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 234
++KVDGKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 64 YVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIE 122
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 53.6 bits (123), Expect = 4e-06
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +1
Query: 49 NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 228
+ ++KVDG VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +
Sbjct: 62 SRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLR 121
Query: 229 VK 234
V+
Sbjct: 122 VE 123
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 52.8 bits (121), Expect = 7e-06
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 28 RSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPE 204
R KL + +VDG VR D +P GFMDV+ + T E FR++ Y VK F +H I E
Sbjct: 60 REARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEE 118
Query: 205 EAKYKLCKVKRVAT 246
E K +++ T
Sbjct: 119 EGDLKPVRIENKTT 132
Score = 47.2 bits (107), Expect = 4e-04
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Frame = +3
Query: 276 HDGRTI--RYPDP------LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 431
HDGR I R DP + + D++ + + +I IKF G + +I GGRN+GRVG
Sbjct: 143 HDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVG 202
Query: 432 TIVSRERHPG-SFDIVHIKDSTGHTF 506
+ S ++ G +V ++D++G+ F
Sbjct: 203 VVKSVQKGWGRKRTLVTLEDASGNLF 228
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 52.4 bits (120), Expect = 1e-05
Identities = 25/62 (40%), Positives = 37/62 (59%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
I+VDG+V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R
Sbjct: 73 IEVDGRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRK 132
Query: 241 AT 246
T
Sbjct: 133 MT 134
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 52.0 bits (119), Expect = 1e-05
Identities = 29/82 (35%), Positives = 43/82 (52%)
Frame = -2
Query: 491 GVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNLRSCDV*LDGIVDFD 312
GVL VHN EG + LA D V + DH Q ++LD + +L DV +G+ D
Sbjct: 68 GVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVELDRIGDLVRRDVDHNGVTLLD 127
Query: 311 KWVWVADGAAIMRYQVRNILGP 246
+ V +GAA+++ R+ L P
Sbjct: 128 HGIRVTNGAAVVQTDARHALVP 149
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 51.2 bits (117), Expect = 2e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +1
Query: 28 RSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEE 207
R L NN + VDG+ D +P G DV++I + NE +R++ D +G+ + +I EE
Sbjct: 60 REVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEE 119
Query: 208 AKYKLCKVKR 237
A K K+ R
Sbjct: 120 ANIKYGKIIR 129
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/74 (31%), Positives = 41/74 (55%)
Frame = +1
Query: 25 NRSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPE 204
NR +++ + + VDG R D +P G DV+++ NE +R++ D KGR ++++ E
Sbjct: 53 NREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-E 111
Query: 205 EAKYKLCKVKRVAT 246
KLC++ T
Sbjct: 112 TNVNKLCRINNKTT 125
Score = 37.9 bits (84), Expect = 0.22
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 324 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVS-RERHPGSFDIVHIKDST 494
DS+ L I ++ +KFE GNL M+ GG++ G G I+ RE + V I T
Sbjct: 151 DSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET 208
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 50.4 bits (115), Expect = 4e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +1
Query: 22 ENRSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITP 201
+ R ++ N +KVDGK + + GFMDV+ I E +R++Y+ +G + + T
Sbjct: 53 KEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETK 110
Query: 202 EEAKYKLCKVKRVATGP 252
E A KL KV+ P
Sbjct: 111 ERASMKLLKVRSKVIAP 127
Score = 49.6 bits (113), Expect = 7e-05
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 267 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSR 446
L THDGRT D KV D + + KI + IK + GN IT G ++ + GTI
Sbjct: 133 LGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKI 192
Query: 447 ERHPG-SFDIVHIKD 488
E G S ++VH ++
Sbjct: 193 EAKEGSSANLVHFQE 207
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 49.2 bits (112), Expect = 9e-05
Identities = 26/62 (41%), Positives = 33/62 (53%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
+ VDGKVR D YP G MDVV I + R+I D T I+ E+AKYK ++
Sbjct: 65 VLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNK 124
Query: 241 AT 246
T
Sbjct: 125 TT 126
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 47.6 bits (108), Expect = 3e-04
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 276 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE-R 452
HDG T+ IK DS+ + I +I+D +KF GN ITGG ++G + TI S E +
Sbjct: 136 HDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIK 195
Query: 453 HPGSFDIVHIKD 488
++VH+ +
Sbjct: 196 SSSGENMVHMNE 207
Score = 34.7 bits (76), Expect = 2.1
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 22 ENRSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITP 201
+ R ++ N+ + VDGKV + GFMD +++ + L + YD KG+ I
Sbjct: 53 KEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVSGNDYL--VSYDRKGKLVILPKPG 110
Query: 202 EEAKYKLCKVK 234
E KL +VK
Sbjct: 111 ETKGLKLLRVK 121
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 47.2 bits (107), Expect = 4e-04
Identities = 23/77 (29%), Positives = 42/77 (54%)
Frame = +3
Query: 267 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSR 446
++T D R ++ IKV DS+ + +I+ +KFE G+LC+IT G++LG + I
Sbjct: 139 IITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEI 198
Query: 447 ERHPGSFDIVHIKDSTG 497
+ ++H++ G
Sbjct: 199 RKTKSLRKMIHLEKIDG 215
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +1
Query: 37 EKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 216
+K+ + + VDGKVR D Y G D +SI N +R++ + G+F H + +A
Sbjct: 59 KKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASA 116
Query: 217 KLCKV 231
K+CK+
Sbjct: 117 KICKI 121
Score = 33.1 bits (72), Expect = 6.3
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 276 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
HDG T+ + K DS+ L + KI + G+L M+T G++ G +G +
Sbjct: 137 HDGTTMIASNDY-KTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKV 189
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = +1
Query: 28 RSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEE 207
R +K+ I +DG R + +PAG MDV+SI + +E + +++D GR ++ + ++
Sbjct: 60 REAKKIIQTGKILIDGLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDK 117
Query: 208 AKYKLCKV 231
KLCK+
Sbjct: 118 TDVKLCKI 125
Score = 41.1 bits (92), Expect = 0.024
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 303 DPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHI 482
+ + K DS+ + I I + F G L ITGG+++G IV E DIV +
Sbjct: 158 EDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTL 217
Query: 483 KDSTGHTF 506
++ G F
Sbjct: 218 ENKDGEKF 225
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/70 (32%), Positives = 36/70 (51%)
Frame = +1
Query: 37 EKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 216
+K+ + + V+G+ D G D+VSI K + +R+ DVKG I E AK
Sbjct: 57 KKILHQRDVLVNGRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKT 116
Query: 217 KLCKVKRVAT 246
+LCK++ T
Sbjct: 117 RLCKIRNKTT 126
Score = 38.3 bits (85), Expect = 0.17
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Frame = +3
Query: 303 DPLIKVNDSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSF 467
D K DS+ + + T +I+D + GN+ MI GG++ G+VG IV R S
Sbjct: 145 DNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVGRIVEIIRTASSV 204
Query: 468 --DIVHIKDSTGHTF 506
++ DS G F
Sbjct: 205 PNHVILTDDSAGERF 219
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 22 ENRSPEK-L*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRIT 198
+NR+ K + + + VDG R D +P G MD+++I N +R++ D K R ++++
Sbjct: 52 DNRAEAKRVLSEGNVLVDGVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLD 111
Query: 199 PEEAKYKLCKVK 234
A KLC+++
Sbjct: 112 GTGAD-KLCRIE 122
Score = 41.9 bits (94), Expect = 0.014
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +3
Query: 324 DSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
DSI L + K++ IK+E GNL MI GG + G VG+I
Sbjct: 152 DSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGSI 189
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 41.9 bits (94), Expect = 0.014
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
+ VDG++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V
Sbjct: 67 VLVDGRIETDLGRGVGLMDVLTVGE--DSFRCILDVNGKLRYRSISDKAAASKLCRVMGK 124
Query: 241 AT 246
+T
Sbjct: 125 ST 126
Score = 33.1 bits (72), Expect = 6.3
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 276 HDGRTIRYPDP-LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRE 449
HDGR I D L D++ + + + F G +TGG ++G +VSR+
Sbjct: 137 HDGRNILVSDAKLYDSGDTLVISLPDQSVAGHHPFSKGATAYLTGGSHIGITAKVVSRD 195
>UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 546
Score = 41.1 bits (92), Expect = 0.024
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +1
Query: 496 DTPSHEVEQRVHNRQ---GHEGVHLAAARQGHPPHHRRGA 606
DTP E Q+VH R+ G E +HL + HPPHHR+GA
Sbjct: 438 DTP--EYVQKVHEREMKSGEEAIHLPNSGTHHPPHHRKGA 475
>UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1;
Kineococcus radiotolerans SRS30216|Rep: Putative
uncharacterized protein - Kineococcus radiotolerans
SRS30216
Length = 189
Score = 40.7 bits (91), Expect = 0.031
Identities = 26/72 (36%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Frame = -2
Query: 638 ARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC--EGVSRGVLDVHNVE 465
AR P RC P R CP R ARC CP R RC C G +R
Sbjct: 13 ARCP-ARCPARCPARCPARCPARCPARCPARCPARCPARCPAHCPNNGAARRWRPAAAAR 71
Query: 464 GAGMSLAGHDGA 429
A G DGA
Sbjct: 72 RARPRRGGRDGA 83
Score = 39.1 bits (87), Expect = 0.096
Identities = 19/44 (43%), Positives = 19/44 (43%)
Frame = -2
Query: 638 ARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
AR P RC P R CP R ARC CP R RC C
Sbjct: 9 ARCP-ARCPARCPARCPARCPARCPARCPARCPARCPARCPARC 51
Score = 36.3 bits (80), Expect = 0.67
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C P R CP R ARC CP R RC C
Sbjct: 7 CFARCPARCPARCPARCPARCPARCPARCPARCPARC 43
>UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransferase;
n=4; Rhodospirillaceae|Rep: Predicted SAM-dependent
methyltransferase - Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264)
Length = 820
Score = 38.3 bits (85), Expect = 0.17
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +1
Query: 535 RQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 642
RQGH+ V AA R GHP HHR G Q R G+ V
Sbjct: 43 RQGHQAVDHAAPR-GHPQHHREGHAQGLRPIGQSGV 77
>UniRef50_UPI0000DB7528 Cluster: PREDICTED: similar to Homeobox
protein araucan; n=1; Apis mellifera|Rep: PREDICTED:
similar to Homeobox protein araucan - Apis mellifera
Length = 677
Score = 37.9 bits (84), Expect = 0.22
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Frame = +1
Query: 421 GVWAPSCPARDIPAPST-----------LCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAA 567
G+ C A +P P+T C + P P H+ +H+ Q H G
Sbjct: 393 GIVKTDCSAAGVPIPATKPKIWSLADTAACKTPPPPTHPHHQQYHHLHHHQQHYGQQQQQ 452
Query: 568 ARQGHPPHHRRGAGQAHRSQ 627
+Q H HH G H SQ
Sbjct: 453 QQQQHQHHHMPSQGHHHHSQ 472
>UniRef50_A5BV74 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 186
Score = 37.5 bits (83), Expect = 0.29
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -2
Query: 515 TSCEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEV 363
TSC+ + G+L+V ++G + L D ++T V ++ H +P +K DEV
Sbjct: 126 TSCKFMPSGILNVDGLKGPLVLLPVLDDSNTAPVPSTSHHDNIPNIKFDEV 176
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 37.5 bits (83), Expect = 0.29
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 49 NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK 228
N + ++GK +D P G D+++ + E +R+ GR + I P+ A+ KL K
Sbjct: 61 NEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGK 120
Query: 229 V 231
+
Sbjct: 121 I 121
>UniRef50_Q9H7Y0 Cluster: Uncharacterized protein CXorf36 precursor;
n=17; Amniota|Rep: Uncharacterized protein CXorf36
precursor - Homo sapiens (Human)
Length = 182
Score = 37.1 bits (82), Expect = 0.39
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 94 TYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKMFRTW 270
+YPA + D I + E+FRL+ + + RI + K C ++RV + F+ W
Sbjct: 96 SYPANYSDDSKIWRPVEIFRLVSKYQNEISDRRICASASAPKTCSIERVLRKTERFQKW 154
>UniRef50_Q73TJ6 Cluster: Putative uncharacterized protein; n=1;
Mycobacterium avium subsp. paratuberculosis|Rep:
Putative uncharacterized protein - Mycobacterium
paratuberculosis
Length = 381
Score = 36.7 bits (81), Expect = 0.51
Identities = 30/79 (37%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Frame = +1
Query: 424 VWAPSCPARDIPAPSTLCTSRTPRDT--PSHEVEQRVHNRQGHEGV---HLAAARQGHPP 588
V P PA P L R R P QR H R+ H GV H AR P
Sbjct: 178 VGGPPRPAGGAGGPRRLGQHRHARQRARPKRHARQRGHERRRHAGVRGDHHGPARD--PR 235
Query: 589 HHRRGAGQAHRSQGRRAVG 645
H+ GAG R + RRAVG
Sbjct: 236 RHQAGAGSPSR-RARRAVG 253
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 36.7 bits (81), Expect = 0.51
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +1
Query: 13 FDPENRSPEKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHR 192
F + K+ ++ + ++G + TD D++S K ++ + ++ D KGR +
Sbjct: 48 FALNTKEVRKILHDRQVLLNGHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYE 107
Query: 193 ITPEEAKYKLCKVKRVAT 246
I+ + AK +L KV T
Sbjct: 108 ISADAAKLQLVKVANKTT 125
>UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens
"Keratin-associated protein 10-4; n=1; Takifugu
rubripes|Rep: Homolog of Homo sapiens
"Keratin-associated protein 10-4 - Takifugu rubripes
Length = 353
Score = 35.9 bits (79), Expect = 0.89
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C CP R C C + RC SC C RC TSC
Sbjct: 149 CWCPTYCRCPTSCWCPTSCRCPTSCWCPTYCRCPTSC 185
Score = 35.9 bits (79), Expect = 0.89
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C CP R C C + RC SC C RC TSC
Sbjct: 275 CWCPTYCRCPTSCWCPTSCRCPTSCWCPTYCRCPTSC 311
Score = 34.7 bits (76), Expect = 2.1
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C CP R C C RC C C RC TSC
Sbjct: 179 CRCPTSCRCPTSCWCPTYCRCPTYCRCPTSCRCPTSC 215
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -2
Query: 644 PTARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
PT+ R C CP R C C + RC SC C C TSC
Sbjct: 182 PTSCRCPTSCWCPTYCRCPTYCRCPTSCRCPTSCWCPTYCWCPTSC 227
Score = 34.3 bits (75), Expect = 2.7
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -2
Query: 644 PTARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
PT+ R C CP R C C + C C C RC TSC
Sbjct: 164 PTSCRCPTSCWCPTYCRCPTSCRCPTSCWCPTYCRCPTYCRCPTSC 209
>UniRef50_Q4QD98 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 928
Score = 35.9 bits (79), Expect = 0.89
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Frame = +1
Query: 493 RDTPSHEVEQRVHNRQGHEGVHLAA--ARQGHPPHHRRGA-------GQAHRSQGRRAVG 645
R+ H V +H+R G G H + AR PP HR+G G++ R Q RRA+
Sbjct: 409 REALLHRVLLELHDRNGSGGAHRQSSPARGETPPRHRQGTDAAVAAPGESERQQSRRAMR 468
Query: 646 LRT 654
L T
Sbjct: 469 LLT 471
>UniRef50_Q2J9B3 Cluster: Two component transcriptional regulator,
LuxR family; n=1; Frankia sp. CcI3|Rep: Two component
transcriptional regulator, LuxR family - Frankia sp.
(strain CcI3)
Length = 306
Score = 35.5 bits (78), Expect = 1.2
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 629 PWLRC-ACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSCE-GVSRGVLDVHNVEGAG 456
PW+R ACP G P RA A P CP T + GVS +L H V GAG
Sbjct: 32 PWVRVSACP-------GVPVRAEASAQPECPAYAKDLTPTGIDGGVSVFLLHAHPVTGAG 84
Query: 455 MSL 447
+ L
Sbjct: 85 LHL 87
>UniRef50_A7DDI7 Cluster: Putative uncharacterized protein; n=2;
Methylobacterium extorquens PA1|Rep: Putative
uncharacterized protein - Methylobacterium extorquens
PA1
Length = 711
Score = 35.5 bits (78), Expect = 1.2
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 511 EVEQRVHNRQGHEGVHLAAARQGH--PPHH-RRGAGQAHRSQGRRAVG 645
E EQR + +GH+ R+ H P HH G G+ HR++ R AVG
Sbjct: 236 EQEQRFEHDEGHDDRRRDQRREAHDLPQHHVGHGGGEQHRARHRDAVG 283
>UniRef50_Q9VVJ8 Cluster: CG6064-PA; n=1; Drosophila
melanogaster|Rep: CG6064-PA - Drosophila melanogaster
(Fruit fly)
Length = 797
Score = 33.9 bits (74), Expect = 3.6
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 439 CPARDIPAPSTLCTSRTPRDTPSH-EVEQRVHNRQGHEGVHLAAARQGHPPHH 594
CP+ +P P + +P+ H + +Q+ H++Q H + H PHH
Sbjct: 625 CPSSPLPIPIPMSAQSSPQQQHHHHQQQQQQHHQQQHHQQQQLSLSLHHSPHH 677
>UniRef50_UPI0000D9DD80 Cluster: PREDICTED: hypothetical protein;
n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
- Macaca mulatta
Length = 203
Score = 33.5 bits (73), Expect = 4.8
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 424 VWAPSCPARDIPAPSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLA 564
+WAPS PAR P PS T + P H GH G+ L+
Sbjct: 29 LWAPSSPARAAPRPSAPRPLSTGQLPPLTSHAAAAHGPAGHAGISLS 75
>UniRef50_Q9D9Z9 Cluster: Adult male testis cDNA, RIKEN full-length
enriched library, clone:1700024J04 product:hypothetical
TNFR/CD27/30/40/95 cysteine-rich region/von Willebrand
factor, type C repeat containing protein, full insert
sequence; n=2; Murinae|Rep: Adult male testis cDNA,
RIKEN full-length enriched library, clone:1700024J04
product:hypothetical TNFR/CD27/30/40/95 cysteine-rich
region/von Willebrand factor, type C repeat containing
protein, full insert sequence - Mus musculus (Mouse)
Length = 199
Score = 33.5 bits (73), Expect = 4.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSCEGVSRGVLDVHNVEGAGMS 450
C+ PR + GC C RC+ C C +RC C + R + + + AG S
Sbjct: 47 CSTCYPRCF-QGCCCTCYGRCSERCWCMCYSRCCQRCSCICRATIRLGFIPVAGAS 101
>UniRef50_Q2CHG7 Cluster: Parallel beta-helix repeat protein; n=4;
cellular organisms|Rep: Parallel beta-helix repeat
protein - Oceanicola granulosus HTCC2516
Length = 3143
Score = 33.5 bits (73), Expect = 4.8
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 484 RTPRDTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 636
R PR +H + RV R G GV L R+ H P R G HR++ RR
Sbjct: 2342 RHPRLRGAHHLG-RVGRRDGGVGVDLRQLRRRHDPRRVRHRGDHHRARRRR 2391
Score = 32.7 bits (71), Expect = 8.3
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +1
Query: 532 NRQGHEGV---HLAAARQGHPPHHRR-GAGQAHRSQGRRAVG 645
+R GH+G H+AA G P HHRR G + R+ GRR VG
Sbjct: 1846 HRHGHDGAARRHVAALPPG-PRHHRRDGQPRRPRAGGRRRVG 1886
>UniRef50_A6FX03 Cluster: Putative uncharacterized protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative
uncharacterized protein - Plesiocystis pacifica SIR-1
Length = 297
Score = 33.5 bits (73), Expect = 4.8
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -2
Query: 584 GCPCRAAARCTPSCPCRL*TRCSTSCEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTAS 405
GCPC +A C P C T S + +G G + AG + + G+ T +
Sbjct: 44 GCPCTSAGACDPGLSCLSETCVSDNADGTDMG----DEADEAGDTSSSSSGSEDDTTTGT 99
Query: 404 RDHT 393
D T
Sbjct: 100 EDTT 103
>UniRef50_Q84LE0 Cluster: Phytocyanin protein, PUP2; n=3;
Arabidopsis thaliana|Rep: Phytocyanin protein, PUP2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 370
Score = 33.5 bits (73), Expect = 4.8
Identities = 18/63 (28%), Positives = 23/63 (36%)
Frame = +1
Query: 430 APSCPARDIPAPSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 609
A P+ P+P + S +P TPSH + H H A H P H
Sbjct: 205 ATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHS 264
Query: 610 QAH 618
AH
Sbjct: 265 PAH 267
>UniRef50_Q22P43 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 2195
Score = 33.5 bits (73), Expect = 4.8
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Frame = -1
Query: 213 LSLLRGDTVDCESAL-----NII----D*TKQFISLLN*DNIHKSSRISRVSPNFPINLY 61
+SL +GD E +L NI+ D T QF N DN K + I+ + P+F +
Sbjct: 670 ISLTKGDICILEMSLSQNFGNIVSQKDDKTAQFFGFQNKDNFQKINHINDLMPDFIGRAH 729
Query: 60 EGVVSQFFRTSVFRVKA 10
+V F + + +R KA
Sbjct: 730 NRIVKSFIQGTSYRAKA 746
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 33.5 bits (73), Expect = 4.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV 231
++VDG RT + G MDVV + T +++R++ +I E K+C+V
Sbjct: 71 VEVDGVKRTSLHHGIGLMDVVELGGTGDIYRMVPSGGAILKPVKIEAAEKDRKICRV 127
>UniRef50_UPI0000E4A3FA Cluster: PREDICTED: similar to RP11-575L7.3;
n=3; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to RP11-575L7.3 - Strongylocentrotus purpuratus
Length = 1322
Score = 33.1 bits (72), Expect = 6.3
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +1
Query: 460 APSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 597
A TL SR +DTPS V+ R GHE V A+ R HH+
Sbjct: 861 ANGTLTKSRAGQDTPSEAVDLRSSVEAGHERVR-ASQRNMQESHHK 905
>UniRef50_UPI0000E4629E Cluster: PREDICTED: similar to KIF27B; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
KIF27B - Strongylocentrotus purpuratus
Length = 955
Score = 33.1 bits (72), Expect = 6.3
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +1
Query: 460 APSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 597
A TL SR +DTPS V+ R GHE V A+ R HH+
Sbjct: 654 ANGTLTKSRAGQDTPSEAVDLRSSVEAGHERVR-ASQRNMQESHHK 698
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.1 bits (72), Expect = 6.3
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 267 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMI 401
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIV 751
>UniRef50_Q73XW5 Cluster: Putative uncharacterized protein; n=1;
Mycobacterium avium subsp. paratuberculosis|Rep:
Putative uncharacterized protein - Mycobacterium
paratuberculosis
Length = 378
Score = 33.1 bits (72), Expect = 6.3
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 427 WAPSCPARDIPAPSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAA-ARQGHPPHHRRG 603
W R++ AP+ C SR R SH Q H G+ A + H R+
Sbjct: 6 WWLFLSGRELVAPARCCRSRATRQHLSHRDRQ-----YRHPGIEFAGDDGRRHRGQRRQD 60
Query: 604 AGQAHRSQGRRAVG 645
AGQA RS+ RR +G
Sbjct: 61 AGQA-RSRRRRGLG 73
>UniRef50_Q3JG68 Cluster: Putative uncharacterized protein; n=1;
Burkholderia pseudomallei 1710b|Rep: Putative
uncharacterized protein - Burkholderia pseudomallei
(strain 1710b)
Length = 414
Score = 33.1 bits (72), Expect = 6.3
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 472 LCTSRTPR-DTPSHEVEQRV-HNRQGHEGVHLAAARQ-GHPPHHRRGAGQAHRSQGRRAV 642
+ ++R PR P H+ +RV H R+ AA R GH P HRR A R RA+
Sbjct: 55 VASARAPRLGAPRHDPVRRVAHGREPPRRRRTAAGRDDGHEPDHRRANADAGRDGRLRAL 114
>UniRef50_Q093W8 Cluster: Tetratricopeptide repeat family; n=2;
Cystobacterineae|Rep: Tetratricopeptide repeat family -
Stigmatella aurantiaca DW4/3-1
Length = 1091
Score = 33.1 bits (72), Expect = 6.3
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 493 RDTPSHEVEQRVHNRQGHEGVHLAAARQGHP 585
+D P+ VE++V + QG EGV+ AA G+P
Sbjct: 835 KDLPADNVEEKVASLQGMEGVYTQAASLGYP 865
>UniRef50_A6FUS7 Cluster: Putative uncharacterized protein; n=1;
Roseobacter sp. AzwK-3b|Rep: Putative uncharacterized
protein - Roseobacter sp. AzwK-3b
Length = 39
Score = 33.1 bits (72), Expect = 6.3
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 496 DTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 609
D E+EQR+ + Q + G+HLAA HHRR AG
Sbjct: 3 DMTIEEIEQRIESLQ-NSGMHLAAKALMRELHHRRKAG 39
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 33.1 bits (72), Expect = 6.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKG 174
+KV+ K + DPT+P D SIE +++ L+ + KG
Sbjct: 136 VKVEHKKQLDPTFPRNDFDKFSIEDMDQVLNLLSNYKG 173
>UniRef50_Q64298 Cluster: Sperm mitochondrial-associated
cysteine-rich protein; n=3; Muroidea|Rep: Sperm
mitochondrial-associated cysteine-rich protein - Rattus
norvegicus (Rat)
Length = 145
Score = 33.1 bits (72), Expect = 6.3
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C CP P CPC A +CPC + C T C
Sbjct: 53 CPCPTP------CPCPATCPAACACPCPMKPCCPTKC 83
>UniRef50_Q96HB5 Cluster: Coiled-coil domain-containing protein 120;
n=8; Theria|Rep: Coiled-coil domain-containing protein
120 - Homo sapiens (Human)
Length = 630
Score = 33.1 bits (72), Expect = 6.3
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = -2
Query: 647 NPTARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSCEGVSRGVLDVHNV 468
+P R PW P P G R + +P+ P R R ++S EG S V
Sbjct: 256 SPERRTPWK----PPPSDLYGDLKSRRNSVASPTSPTRSLPRSASSFEGRSVPATPVLT- 310
Query: 467 EGAGMSLAGHDGAHTPQVTASRD 399
GAG L +G H+ Q + S+D
Sbjct: 311 RGAGPQLCKPEGLHSRQWSGSQD 333
>UniRef50_UPI00005A5D2B Cluster: PREDICTED: similar to Protein
CXorf36 precursor; n=2; Canis lupus familiaris|Rep:
PREDICTED: similar to Protein CXorf36 precursor - Canis
familiaris
Length = 628
Score = 32.7 bits (71), Expect = 8.3
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 91 PTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKMFRTW 270
P+YPA + D + E+ RL+ + + RI A K C ++R+ F+ W
Sbjct: 95 PSYPANYSDDSKTWRPVEVSRLVSKQQSDISDRRICASAAAPKTCSIERILRKTGRFQKW 154
>UniRef50_UPI000023C9CD Cluster: hypothetical protein FG00511.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG00511.1 - Gibberella zeae PH-1
Length = 350
Score = 32.7 bits (71), Expect = 8.3
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 457 PAPSTLCTSRTP-RDTPSHEVEQRVHNRQGHEGVHLAAARQGHP 585
P P L RTP RDTP + + HNR G G A +R P
Sbjct: 257 PNPEALNGGRTPMRDTPGPDTLKPQHNRVGSRGDSQAPSRDASP 300
>UniRef50_Q5NW57 Cluster: Putative uncharacterized protein; n=1;
Azoarcus sp. EbN1|Rep: Putative uncharacterized protein
- Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum
(strain EbN1))
Length = 213
Score = 32.7 bits (71), Expect = 8.3
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 472 LCTSRTPRDTP--SHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 624
L + R PRD P + R H RQG H AR+ P HHR G R+
Sbjct: 161 LASERAPRDHPLGRRQAVCRTHLRQGLPR-HFRRARETEPGHHRTQRGHEGRA 212
>UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: VrrB
- Bacillus anthracis
Length = 115
Score = 32.7 bits (71), Expect = 8.3
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 508 HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 618
H Q H+ QGH G H QGH HH Q H
Sbjct: 23 HHGHQGHHHHQGHHGHHGHHHHQGHHGHHGHHQQQVH 59
>UniRef50_Q3W5Q3 Cluster: Zeta toxin; n=1; Frankia sp. EAN1pec|Rep:
Zeta toxin - Frankia sp. EAN1pec
Length = 522
Score = 32.7 bits (71), Expect = 8.3
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +1
Query: 421 GVWAPSCP-ARDIPAPSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 597
G++ P CP R++ + + R H + Q G L +GH HR
Sbjct: 15 GLFVPLCPEGRELGSRREGSSGEGIRPAAVHSGQSAAVRTQRRRGDQL----RGHARPHR 70
Query: 598 RGAGQAHRSQGRRAVGLRT 654
G G HR RRA RT
Sbjct: 71 SGGGGLHRPDRRRATPART 89
>UniRef50_Q6QJ04 Cluster: Cys-rich cocoon protein; n=1; Theromyzon
rude|Rep: Cys-rich cocoon protein - Theromyzon rude
Length = 408
Score = 32.7 bits (71), Expect = 8.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 578 PCRAAARCTPSCPCRL*TRCSTSCE-GVSRGVLDVHNVEG 462
PC A C P CP +CST C+ G + +DV V G
Sbjct: 147 PCYPVAECVPDCPQ---VKCSTVCQVGTGQMSVDVRRVTG 183
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 707,534,010
Number of Sequences: 1657284
Number of extensions: 15599659
Number of successful extensions: 50901
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 47408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50683
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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