Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30238
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   3.0  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   4.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.2  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 553 RLRALADYEHVV-QPRAKV-CPVESLMCTMSKEPGCLSRDTMVPTRPKLR 410
           RL   A ++ V  + RA + C V+S     +K  GC S ++ V T   LR
Sbjct: 75  RLAVEAGFDWVYYESRAHIHCSVKSESSQAAKYGGCFSGESTVLTSTGLR 124


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 400 IIHKFPDSNLMKSIIFVVAMSNWMESL 320
           II +F    L   +  VV +SNW E L
Sbjct: 239 IIARFNIERLCNGLKRVVKLSNWREPL 265


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 571 RQGHPPHHRRG 603
           RQG PPHH  G
Sbjct: 57  RQGIPPHHYGG 67


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 305 PTYQSQRFHPVRHRNYEDYGLHQ 373
           P  Q Q ++   H N E+Y  HQ
Sbjct: 353 PNPQQQYYYNKNHPNSENYINHQ 375


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 305 PTYQSQRFHPVRHRNYEDYGLHQ 373
           P  Q Q ++   H N E+Y  HQ
Sbjct: 301 PNPQQQYYYNKNHPNSENYINHQ 323


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,204
Number of Sequences: 336
Number of extensions: 3800
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)