Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30238
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   127   2e-30
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   127   2e-30
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   127   2e-30
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    28   1.1  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.3  
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    27   3.3  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   4.3  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   7.5  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.5  
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    25   7.5  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.9  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  127 bits (306), Expect = 2e-30
 Identities = 56/84 (66%), Positives = 69/84 (82%)
 Frame = +3

Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
           VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI  FIKF++    M+TGGRN+GRVGTI
Sbjct: 136 VPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTI 195

Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
           V RE H GSF+I+H+KD+    FA
Sbjct: 196 VHREHHLGSFEIIHVKDALDREFA 219



 Score =  116 bits (278), Expect = 4e-27
 Identities = 51/65 (78%), Positives = 57/65 (87%)
 Frame = +1

Query: 61  IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
           IKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 70  IKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRV 129

Query: 241 ATGPK 255
             G K
Sbjct: 130 QLGAK 134



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/40 (62%), Positives = 35/40 (87%)
 Frame = +2

Query: 509 TRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
           TRL+NVF+IG+  K++ISLP+GKG++L+I EERD+R A K
Sbjct: 220 TRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  127 bits (306), Expect = 2e-30
 Identities = 56/84 (66%), Positives = 69/84 (82%)
 Frame = +3

Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
           VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI  FIKF++    M+TGGRN+GRVGTI
Sbjct: 136 VPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTI 195

Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
           V RE H GSF+I+H+KD+    FA
Sbjct: 196 VHREHHLGSFEIIHVKDALDREFA 219



 Score =  114 bits (274), Expect = 1e-26
 Identities = 50/65 (76%), Positives = 57/65 (87%)
 Frame = +1

Query: 61  IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
           I+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 70  IQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRV 129

Query: 241 ATGPK 255
             G K
Sbjct: 130 QLGAK 134



 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 25/40 (62%), Positives = 35/40 (87%)
 Frame = +2

Query: 509 TRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
           TRL+NVF+IG+  K++ISLP+GKG++L+I EERD+R A K
Sbjct: 220 TRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  127 bits (306), Expect = 2e-30
 Identities = 56/84 (66%), Positives = 69/84 (82%)
 Frame = +3

Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
           VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI  FIKF++    M+TGGRN+GRVGTI
Sbjct: 136 VPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTI 195

Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
           V RE H GSF+I+H+KD+    FA
Sbjct: 196 VHREHHLGSFEIIHVKDALDREFA 219



 Score =  114 bits (275), Expect = 9e-27
 Identities = 50/65 (76%), Positives = 57/65 (87%)
 Frame = +1

Query: 61  IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
           IKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 70  IKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRV 129

Query: 241 ATGPK 255
             G K
Sbjct: 130 QLGAK 134



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/40 (62%), Positives = 35/40 (87%)
 Frame = +2

Query: 509 TRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
           TRL+NVF+IG+  K++ISLP+GKG++L+I EERD+R A K
Sbjct: 220 TRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 479 HQGLHGTHLRTRLNNVF-IIGKGTKAYISLP 568
           H+GL GTH  T LNNV     KG+   +S+P
Sbjct: 86  HRGLAGTHDVTFLNNVLNAFVKGSDEEVSIP 116


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 314 QSQRFHPVRHRNYED 358
           ++++ HPVRH  YED
Sbjct: 5   ENEKIHPVRHSKYED 19


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 372 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 476
           KFE   LC + G   L R+G  +  E   GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 281 WPHHPLPRPTYQSQR 325
           WPHH LP   + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 284 PHHPLPRPTYQSQRFHPVRHRNYEDY 361
           PH+  P    + Q+ HPV+  N+  Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 210 SLLRGDTVDCESALNIID*TKQ 145
           S  RGDT D  +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 320 DFDKWVWVADGAAIMRYQVRNILGPVATR 234
           D DK  W   G  I  + V NI+GP   +
Sbjct: 52  DNDKNKWGGKGVTIAVHNVNNIIGPALVK 80


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 287 HHPLPRPTYQSQRFHPVR 340
           H PLPRP  Q +   PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,240
Number of Sequences: 5004
Number of extensions: 59233
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)