Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30238
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 131 4e-31
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 130 7e-31
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 130 1e-30
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 35 0.051
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27... 30 1.9
01_06_1326 - 36318942-36319037,36319126-36319135,36319298-363193... 29 2.6
11_04_0011 - 12147113-12147278,12148216-12149145,12149463-121498... 29 3.4
12_02_0656 + 21601782-21601925,21602249-21602460,21602686-216028... 29 4.5
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 4.5
04_04_1303 - 32487174-32487871,32488583-32489123 29 4.5
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 29 4.5
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 5.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.9
12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753 28 7.8
11_05_0087 + 18970741-18972702 28 7.8
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 7.8
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 7.8
03_02_0277 + 7056341-7056391,7056681-7056764,7057107-7057223,705... 28 7.8
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 131 bits (317), Expect = 4e-31
Identities = 54/84 (64%), Positives = 71/84 (84%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
+PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I
Sbjct: 136 IPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVI 195
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
+RE+H GSF+ +H++D+ GH FA
Sbjct: 196 KNREKHKGSFETIHVEDALGHAFA 219
Score = 93.1 bits (221), Expect = 2e-19
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
+ VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V
Sbjct: 70 VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV 129
Query: 241 ATGPK 255
G K
Sbjct: 130 QFGQK 134
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/44 (61%), Positives = 33/44 (75%)
Frame = +2
Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAA 625
G TRL NVF IGKG K ++SLP+GKGI+L+I EE+ KR AA
Sbjct: 215 GHAFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAA 258
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 130 bits (315), Expect = 7e-31
Identities = 54/84 (64%), Positives = 71/84 (84%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
+P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I
Sbjct: 152 IPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVI 211
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
SRE+H GSF+ +H++D+ GH FA
Sbjct: 212 KSREKHKGSFETIHVEDALGHQFA 235
Score = 98.7 bits (235), Expect = 4e-21
Identities = 45/65 (69%), Positives = 51/65 (78%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
+ VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V
Sbjct: 86 VMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSV 145
Query: 241 ATGPK 255
G K
Sbjct: 146 QFGQK 150
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = +2
Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIA 622
G TR+ NVF IGK K ++SLP+GKGI+L+I EE KR A
Sbjct: 231 GHQFATRMGNVFTIGKERKPWVSLPKGKGIKLSIIEEARKRNA 273
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 130 bits (314), Expect = 1e-30
Identities = 53/84 (63%), Positives = 71/84 (84%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
+PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG I
Sbjct: 136 IPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVI 195
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
+RE+H GSF+ +H++D+ GH FA
Sbjct: 196 KNREKHKGSFETIHVEDALGHQFA 219
Score = 93.1 bits (221), Expect = 2e-19
Identities = 41/65 (63%), Positives = 50/65 (76%)
Frame = +1
Query: 61 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
+ VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V
Sbjct: 70 VLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSV 129
Query: 241 ATGPK 255
G K
Sbjct: 130 QFGQK 134
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/44 (61%), Positives = 33/44 (75%)
Frame = +2
Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAA 625
G TRL NVF IGKG K ++SLP+GKGI+L+I EE+ KR AA
Sbjct: 215 GHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAA 258
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 35.1 bits (77), Expect = 0.051
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 588 RRMPLPRGSEMYAFVPLPIMNTLFNLVRRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPS 415
+R+ LP+ E YA L + V+RC+P S A +CR+SR S+ W P+ S
Sbjct: 396 QRVTLPKLVESYARDARLSPERLVDAVQRCLPESLRAAVQRCRQSRPASKVVEWAPYRHS 455
Query: 414 Y 412
+
Sbjct: 456 F 456
>06_01_0027 -
271199-271424,271628-272095,272721-273018,273133-273343,
273427-274124,274921-274969,276059-276112,276244-276275,
276319-276484,276563-276628,276717-276812,276868-276957,
277302-277398,277496-277575,277709-277753,278006-278134,
278593-278722,278888-279222,279918-280053,280149-280328,
280422-280679,280752-281137
Length = 1409
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -2
Query: 332 DGIVDFDKWVWVADGAAIMRYQVRNILGPVATRLTLHNLYLASSGVI 192
D + D D +W+A A+ RY+ IL PV R L LA +G+I
Sbjct: 366 DQLPDADLPIWIAAQRAVSRYE--GILSPVGPRGRLLRRLLAWTGLI 410
>01_06_1326 -
36318942-36319037,36319126-36319135,36319298-36319368,
36319594-36319679,36320217-36320295,36320401-36320493,
36320656-36320678,36320829-36320956,36321182-36321278,
36321394-36321646,36321744-36321887,36335560-36335811
Length = 443
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 518 STSCEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTA 408
+ SC GV + VL+VH G+ ++ GAH Q A
Sbjct: 230 TVSCGGVMKAVLNVHITNGSETAVVALWGAHATQFHA 266
>11_04_0011 -
12147113-12147278,12148216-12149145,12149463-12149834,
12149884-12150007,12150343-12150391
Length = 546
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +1
Query: 439 CPARDIPAPS-TLCTSRTPRD---TPSHEVEQRVHNR 537
C +D+ S TLCT R P + TPS E ++R++NR
Sbjct: 323 CSLQDLKGISPTLCTHRIPLNPSCTPSREPQRRLNNR 359
>12_02_0656 +
21601782-21601925,21602249-21602460,21602686-21602813,
21602905-21602986,21603308-21603406,21603619-21604054,
21604280-21604350,21604438-21604523,21604740-21604750
Length = 422
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 518 STSCEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTA 408
+ SC GV + VL+VH G+ ++ GAH Q A
Sbjct: 100 TVSCGGVMKAVLNVHITNGSETAVIALWGAHDTQFHA 136
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +1
Query: 460 APSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRA 639
A ST C +T D SHE+E++V R+ R+ PP R +A +
Sbjct: 45 ACSTKCAGKTGADHMSHEIEEKVRARR---------RRRSTPPPRPRPCREARELNSTQE 95
Query: 640 VGLRTIN 660
+G R ++
Sbjct: 96 MGGRPVS 102
>04_04_1303 - 32487174-32487871,32488583-32489123
Length = 412
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -2
Query: 593 W*GGCPCRAAARCTPSCPCRL*TRCSTSCEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQV 414
W C CR A C R + E ++R VL V AG++ G H P +
Sbjct: 145 WASACRCRGEAPAATPCFDRSVIKWPGG-EEIARSVLRVR----AGLACRGTQAFHPPDI 199
Query: 413 TASRDHTQVPR 381
R T+ P+
Sbjct: 200 HRGRAATRTPK 210
>03_03_0025 +
13848450-13849420,13850921-13851131,13851327-13851459,
13851576-13851832
Length = 523
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +1
Query: 478 TSRTPRDTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 642
+S P PS EVE + R+ H + L PHHRR + + S R V
Sbjct: 139 SSSAPPPPPSPEVE--LLRRRRHVSISLPDDDDEIAPHHRRNSSSSSSSASARLV 191
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 565 AARQGHPPHHRRGAG 609
AAR+GHPP H G G
Sbjct: 4 AARRGHPPPHENGVG 18
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 148 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 252
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753
Length = 375
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 505 SHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 600
SHE+ Q +H+ Q + + GH HHRR
Sbjct: 235 SHEL-QHIHHHQQQQFYYHEVVHDGHGHHHRR 265
>11_05_0087 + 18970741-18972702
Length = 653
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 451 DIPAPSTLCTSRTPRDTPSH-EVEQRVHN-RQGHEGVHLAAARQGHPPHHRRGAGQ 612
D+P LC R R P + E ++H R +H R GH HRRGA +
Sbjct: 27 DVPGLPRLCRQRPCRAVPDGGQEEPQLHVVRAPRRPLH---GRHGHHREHRRGADE 79
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 273 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 407
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 562 RDVRLRALADYEH--VVQPRAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHK 389
R R R + YE + K+C V+S S +PG +SRD VP KL P K
Sbjct: 1533 RGKRAREVRSYEDQWTEEEFEKLCQVDS---PDSPQPGGISRDADVPKVVKLEVPPESSK 1589
Query: 388 FPD 380
P+
Sbjct: 1590 EPE 1592
>03_02_0277 +
7056341-7056391,7056681-7056764,7057107-7057223,
7057335-7057772,7057889-7058295,7058371-7058470,
7058707-7058793,7059056-7059544
Length = 590
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -1
Query: 522 LFNLVRRCVP--WSP*CAQCRRSRDVSRGTRWCPHAPSY 412
L V C+P P Q RSR G W PH P++
Sbjct: 531 LLRAVESCLPEPLRPAAQQAARSRGGGGGVEWRPHNPAF 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,032,468
Number of Sequences: 37544
Number of extensions: 477486
Number of successful extensions: 1505
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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