Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30238
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             137   7e-33
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)                29   4.5  
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      28   6.0  
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)                   28   7.9  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  137 bits (332), Expect = 7e-33
 Identities = 56/84 (66%), Positives = 72/84 (85%)
 Frame = +3

Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
           VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN+GRVG +
Sbjct: 560 VPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVGMV 619

Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
             RE+H GSFDIVH+KD+TGH FA
Sbjct: 620 THREKHAGSFDIVHVKDATGHQFA 643



 Score =  109 bits (261), Expect = 3e-24
 Identities = 50/73 (68%), Positives = 59/73 (80%)
 Frame = +1

Query: 37  EKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 216
           +K+     IK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKY
Sbjct: 486 KKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKY 545

Query: 217 KLCKVKRVATGPK 255
           KL +V+RV  G K
Sbjct: 546 KLGRVRRVDVGAK 558



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 30/45 (66%), Positives = 37/45 (82%)
 Frame = +2

Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
           G    TRL N+F+IGKG K Y+SLP+GKG+RL+IAEERD+RIA K
Sbjct: 639 GHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSIAEERDRRIAEK 683


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 581 CPCRAAARCTPSCPCRL*TRCSTSCEGVSRGVLDVHNVEGAGMSL 447
           C C    RC  SC C    RC +     S+ V+ VH + G G+ L
Sbjct: 53  CACACWKRCH-SCACACWQRCHSCACACSKSVILVHALVGKGVIL 96


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +1

Query: 487 TPRDTPSHEVE--QRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR-SQGRRAVGLRT 654
           TP+D  SH  +  Q      G+  ++     + HPP H +GA    + S G    G  T
Sbjct: 546 TPQDHESHPPDHTQGADGGSGNTSLNSPQHHESHPPDHTQGADSGEKTSSGAEKTGTST 604


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 581  CPCRAAARCTPSCPCRL*TRCSTSC 507
            CP      C P CP +  T+ S+SC
Sbjct: 1553 CPVYCLTSCKPDCPIKCCTKLSSSC 1577


>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 517 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 609
           +Q  H+  G+   H      GH  HHRR +G
Sbjct: 41  DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71


>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 518 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 631
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409


>SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)
          Length = 407

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 431 HHRVPRETSRLLRHCAHQGLHGTHLRTRLNNVFIIGKGTKAY-ISLPRGKGIRLTIAEER 607
           H + P      +  CA +G     ++T+  N F+ G        S    KG+   +  E+
Sbjct: 111 HQQTPLTWENAIAQCAQKGASLASVQTKEQNTFVSGLIVVCVKESSNPWKGLIFVVNHEQ 170

Query: 608 DKRIAAK 628
           DK  AAK
Sbjct: 171 DKATAAK 177


>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1252

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 518 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 631
           N + I G  T  +    LPR +G+  TIA+E D+R A  +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 442 PARDIPAPSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAAARQG 579
           P R   +P     +RTP  TPS        +R G  G  LA++ +G
Sbjct: 390 PRRAAASPLVGYAARTPPRTPSIRTHSTYSSRSGVSGASLASSPRG 435


>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +1

Query: 523 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 621
           +VHN +G      EGV    +R GH  H  RG+   HR
Sbjct: 197 QVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234


>SB_20311| Best HMM Match : PAN (HMM E-Value=0.00055)
          Length = 443

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 422 ACGHH-RVPRETSRLLRHCAHQGLHGTHLRTRLNNVFIIGKGTKAYIS 562
           ACG   R+P + S L R+CA  G +GT          ++  GTK   S
Sbjct: 245 ACGSFVRLPEDDSILTRNCAKWGSNGTLPEGEWGKNALLKDGTKTETS 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,465,899
Number of Sequences: 59808
Number of extensions: 515067
Number of successful extensions: 1559
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)