Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30238
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 122 2e-28
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 30 1.7
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 30 1.7
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 30 1.7
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 30 1.7
Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical p... 30 1.7
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 30 1.7
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 30 1.7
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 3.0
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 3.0
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.0
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.0
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z30973-2|CAA83221.2| 163|Caenorhabditis elegans Hypothetical pr... 28 5.3
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 28 5.3
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 6.9
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 9.2
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 122 bits (295), Expect = 2e-28
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = +3
Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL +TGGRN+GRVG I
Sbjct: 135 VPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGII 194
Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
RER PG+ DI+HIKDS GH+FA
Sbjct: 195 GHRERLPGASDIIHIKDSAGHSFA 218
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/70 (57%), Positives = 52/70 (74%)
Frame = +1
Query: 37 EKL*NNAFIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 216
+K+ ++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +
Sbjct: 61 KKILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADF 120
Query: 217 KLCKVKRVAT 246
KLCKVK V T
Sbjct: 121 KLCKVKSVRT 130
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = +2
Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
G TR++NVF+IGKG KA +SLP G GIRL+IAEERDKR+A K
Sbjct: 214 GHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMAQK 258
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 499 TPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 603
+P+H + Q+ +NR G H ++ G PP H+RG
Sbjct: 838 SPAHSILQQHNNRAGS---HSGSSGAGRPPTHQRG 869
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 499 TPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 603
+P+H + Q+ +NR G H ++ G PP H+RG
Sbjct: 864 SPAHSILQQHNNRAGS---HSGSSGAGRPPTHQRG 895
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 499 TPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 603
+P+H + Q+ +NR G H ++ G PP H+RG
Sbjct: 838 SPAHSILQQHNNRAGS---HSGSSGAGRPPTHQRG 869
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 499 TPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 603
+P+H + Q+ +NR G H ++ G PP H+RG
Sbjct: 864 SPAHSILQQHNNRAGS---HSGSSGAGRPPTHQRG 895
>Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical
protein C01G6.8c protein.
Length = 769
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 499 TPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 603
+P+H + Q+ +NR G H ++ G PP H+RG
Sbjct: 705 SPAHSILQQHNNRAGS---HSGSSGAGRPPTHQRG 736
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 499 TPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 603
+P+H + Q+ +NR G H ++ G PP H+RG
Sbjct: 838 SPAHSILQQHNNRAGS---HSGSSGAGRPPTHQRG 869
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 499 TPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 603
+P+H + Q+ +NR G H ++ G PP H+RG
Sbjct: 864 SPAHSILQQHNNRAGS---HSGSSGAGRPPTHQRG 895
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C C PR C CR C +C C TRC T C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCC 116
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C C PR C CR C +C C TRC T C
Sbjct: 84 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCC 114
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C C PR C CR C +C C TRC T C
Sbjct: 85 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCC 115
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C C PR C CR C +C C TRC T C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCC 116
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 389 LVYDHGRP*LGACGHHRVPRETSRLLRH 472
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 389 LVYDHGRP*LGACGHHRVPRETSRLLRH 472
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 287 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 370
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>Z30973-2|CAA83221.2| 163|Caenorhabditis elegans Hypothetical
protein B0284.3 protein.
Length = 163
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = +1
Query: 391 CV*SREAVTWGVWA----PSCPARDIPAPSTLCTSRTPRDTPSHE 513
C S + W VWA SC +I + +T C P + PS+E
Sbjct: 91 CKQSSSSSEWAVWASPVPSSCHPANISSIATKCKKSFPSEKPSNE 135
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 430 APSCPARDIPAPSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 597
AP P+ +P P + TS + T E + + R+G G H +A Q P R
Sbjct: 984 APQLPSLPLPLPVPITTSAST--TNLEETTGKENGREGGGGSHASAQEQQVPETER 1037
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 617 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSC 507
C C P+ C CR C +C C TRC T C
Sbjct: 85 CCCCRPKCC---CCCRRCCTCCRTCCC---TRCCTCC 115
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +1
Query: 526 VHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 621
VH+ H+G H R+ H HH G H+
Sbjct: 115 VHDDHHHDGHHKKHGRKEHDHHHGHHHGHHHK 146
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +2
Query: 401 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 502
HG G+ G H T L H H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,067,707
Number of Sequences: 27780
Number of extensions: 357788
Number of successful extensions: 1164
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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