Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30238
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.093
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   2.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.6  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.1  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.093
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 210 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 94
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 448 RDIPAPSTLCTSRTPRDTPSHE 513
           RD+P  ST  T+   RDT + E
Sbjct: 137 RDLPGKSTTTTAEVKRDTINPE 158


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 252 RSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 133
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 482 DVHNVEGAGMSLAGHD 435
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 448 RDIPAPSTLCTSRTPRDTPSHE 513
           RD+P  ST  T    RDT + E
Sbjct: 137 RDLPGKSTTTTVEVKRDTINPE 158


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 511 EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 636
           E  QR H+ Q H     + A Q H   +++   Q  R Q R+
Sbjct: 136 ETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = +1

Query: 487 TPRDTPSHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 594
           TP    SH       H+       + AA + GH PHH
Sbjct: 429 TPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,803
Number of Sequences: 438
Number of extensions: 4491
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)