Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30238
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   131   5e-31
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             130   6e-31
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   130   6e-31
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    33   0.13 
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    29   3.7  
At3g20840.1 68416.m02635 ovule development protein, putative sim...    29   3.7  
At5g53240.1 68418.m06618 expressed protein contains Pfam profile...    28   4.9  
At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-containi...    28   6.5  
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote...    28   6.5  
At2g38570.1 68415.m04738 expressed protein ; expression supporte...    27   8.6  
At1g55590.1 68414.m06363 F-box family protein  ; similar to SKP1...    27   8.6  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  131 bits (316), Expect = 5e-31
 Identities = 56/84 (66%), Positives = 71/84 (84%)
 Frame = +3

Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
           +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+ M+TGGRN GRVG I
Sbjct: 136 IPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVI 195

Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
            +RE+H GSF+ +HI+DSTGH FA
Sbjct: 196 KNREKHKGSFETIHIQDSTGHEFA 219



 Score =  103 bits (246), Expect = 1e-22
 Identities = 47/65 (72%), Positives = 53/65 (81%)
 Frame = +1

Query: 61  IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
           I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +
Sbjct: 70  IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129

Query: 241 ATGPK 255
             G K
Sbjct: 130 QFGQK 134



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +2

Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
           G    TRL NV+ IGKGTK ++SLP+GKGI+LTI EE  KR+A++
Sbjct: 215 GHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQ 259


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  130 bits (315), Expect = 6e-31
 Identities = 56/84 (66%), Positives = 71/84 (84%)
 Frame = +3

Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
           +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+ M+TGGRN GRVG I
Sbjct: 136 IPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVI 195

Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
            +RE+H GSF+ +HI+DSTGH FA
Sbjct: 196 KNREKHKGSFETIHIQDSTGHEFA 219



 Score =  103 bits (246), Expect = 1e-22
 Identities = 47/65 (72%), Positives = 53/65 (81%)
 Frame = +1

Query: 61  IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
           I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +
Sbjct: 70  IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129

Query: 241 ATGPK 255
             G K
Sbjct: 130 QFGQK 134



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +2

Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
           G    TRL NV+ IGKGTK ++SLP+GKGI+LTI EE  KR+A++
Sbjct: 215 GHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQ 259


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  130 bits (315), Expect = 6e-31
 Identities = 56/84 (66%), Positives = 71/84 (84%)
 Frame = +3

Query: 258 VPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTI 437
           +PYL T+DGRTIRYPDPLIK ND+I+LD+   KI++FIKF+ GN+ M+TGGRN GRVG I
Sbjct: 136 IPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVI 195

Query: 438 VSRERHPGSFDIVHIKDSTGHTFA 509
            +RE+H GSF+ +HI+DSTGH FA
Sbjct: 196 KNREKHKGSFETIHIQDSTGHEFA 219



 Score =  103 bits (246), Expect = 1e-22
 Identities = 47/65 (72%), Positives = 53/65 (81%)
 Frame = +1

Query: 61  IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 240
           I+VDGKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I  EEAK+KLCKV+ +
Sbjct: 70  IQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSI 129

Query: 241 ATGPK 255
             G K
Sbjct: 130 QFGQK 134



 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 27/45 (60%), Positives = 35/45 (77%)
 Frame = +2

Query: 494 GTHLRTRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 628
           G    TRL NV+ IGKGTK ++SLP+GKGI+LTI EE  KR++A+
Sbjct: 215 GHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLSAQ 259


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/63 (28%), Positives = 23/63 (36%)
 Frame = +1

Query: 430 APSCPARDIPAPSTLCTSRTPRDTPSHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 609
           A   P+   P+P +   S +P  TPSH       +   H   H  A    H P H     
Sbjct: 205 ATPSPSPKSPSPVSHSPSHSPAHTPSHSPAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHS 264

Query: 610 QAH 618
            AH
Sbjct: 265 PAH 267


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
           domain-containing protein similar to eukaryotic protein
           synthesis initiation factor [Homo sapiens] GI:3941724;
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 1544

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 574 QGHPPHHRRGAGQAHRSQG 630
           QGHPPH     G  H++QG
Sbjct: 132 QGHPPHPMHHQGMMHQAQG 150


>At3g20840.1 68416.m02635 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 529

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 433 PSCPARDIPAPSTLCTSRTPRDTPSHEVEQRVHNRQ 540
           PS  + D+   +  C S TP ++  HE+++  HN Q
Sbjct: 52  PSVQSNDVVVAA--CDSNTPNNSSYHELQESAHNLQ 85


>At5g53240.1 68418.m06618 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 361

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/77 (25%), Positives = 29/77 (37%)
 Frame = -2

Query: 575 CRAAARCTPSCPCRL*TRCSTSCEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDH 396
           CR A +       R+   C  S   +     D+  + G+G  L G  G HTP        
Sbjct: 156 CRPALKNPEWTNIRIQNPCFFSSRVMFSETHDMFRIPGSGGHLIGSWGLHTPPKIDKLRF 215

Query: 395 TQVPRLKLDEVHNLRSC 345
             +P+L   +   L SC
Sbjct: 216 QNLPKLTKTKRKLLHSC 232


>At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 882

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 482 QGLHGTHLRTRLNNVFIIGKGTKA-YISLPRGKGIRLTIAEERDKR 616
           QGLHG  L++ +N+V ++  G  A Y+   R    R  + +E D R
Sbjct: 227 QGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDAR-RVFDEMDVR 271


>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 658

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 276 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 407
           H+  +  +P    ++N+ I+LDI++      I F   NL  +TG
Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167


>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 351 TKIMDFIKFESGNLCMITGGRNLGRVGT 434
           T I+ +IK   G   +  GGRN+G+V T
Sbjct: 196 TYILVYIKISVGYRVVTPGGRNIGKVST 223


>At1g55590.1 68414.m06363 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 607

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
 Frame = -2

Query: 509 CEGVS-RGVLDVHNVEGA-GMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNLRSCDV* 336
           C  VS RG+  + N EG    +L+  D  H P ++    HT     K     ++RSC   
Sbjct: 448 CRRVSDRGISYLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRSCFHV 507

Query: 335 LDGIVD-FDKWVWVADGAAIMRYQVRNILGPVATRLTLHNLYLASSGVIRWI 183
            D  ++    W   A+G +    Q+R        +L +HN    ++G +RW+
Sbjct: 508 TDSSIESLATWERQAEGGS---KQLR--------KLNVHNCVSLTTGALRWL 548


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,118
Number of Sequences: 28952
Number of extensions: 336575
Number of successful extensions: 1068
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)