Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30237
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    46   6e-06
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       27   1.8  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   2.3  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   5.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   9.4  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    25   9.4  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   9.4  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 45.6 bits (103), Expect = 6e-06
 Identities = 20/63 (31%), Positives = 34/63 (53%)
 Frame = +3

Query: 57   MALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNPF 236
            +A+N   KLKNY++A+    +LL+L      A+ A + +   ++ P D  ++ YD H   
Sbjct: 1094 LAINASHKLKNYKSASFLGNKLLQLAESGPAAEAANRAITLGDRNPHDAFEIEYDPHVEM 1153

Query: 237  SIC 245
             IC
Sbjct: 1154 RIC 1156



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 260  PIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGKDALGLR 388
            P+Y G   + CS+C A +   +  ++C VC V  IG+   G R
Sbjct: 1162 PVYSGDDFDVCSVCGAVYHKGYVNEVCTVCDVGGIGQKGTGRR 1204


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 534 SLTSQELMRPTISEVQTIICIY*LCRHYNV-RLLINIK 644
           S+ + +L++ T+S+V  +IC+   CR   V R ++N K
Sbjct: 128 SIVTNKLLKFTMSDVNHVICVSHTCRENTVLRAVLNPK 165


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 159 ARKILQACEKTPTDEHQLLYDEHNPFSIC 245
           +R +L  C++   D +Q+L  E +P SIC
Sbjct: 369 SRGVLSFCDQAIRDLYQILEVEFHPLSIC 397


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 439 DTRF*RASLSVEL*GTDTEAERVLAD 362
           D  F R  LSVE+  TD E   +LAD
Sbjct: 346 DVIFMRNGLSVEIDNTDAEGRLILAD 371


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 111 ARRLLELGPRPEVAQQARKILQ 176
           A R++E+GP P +A  A++ L+
Sbjct: 42  AERIVEIGPSPTLAGMAKRTLK 63


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 639 YLLKVLHYNVYIINIYKLLFALQKLLD 559
           YL   L +N  I+N+ + ++ +QKLL+
Sbjct: 143 YLADTLRHNQNILNLCERIYNIQKLLN 169


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 456 IIIIKYVLYVSYLFYFCSSFVRSFGHSLTSQE 551
           ++II  V+++++ F++       F H+L +QE
Sbjct: 28  LVIILSVIFINFFFFYLCRCCVYFYHTLENQE 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,940
Number of Sequences: 5004
Number of extensions: 32126
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)