Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30237
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 58 8e-09
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 58 8e-09
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 57 1e-08
05_03_0250 + 10955281-10955419,10955524-10955727,10955985-109560... 30 1.8
01_01_1125 - 8920590-8924372 29 3.2
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 28 7.4
08_02_0412 + 16865138-16865392 28 7.4
06_01_0614 + 4448129-4448157,4448733-4449231,4449512-4449550,444... 28 7.4
05_03_0685 + 16992899-16993570 27 9.7
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +3
Query: 54 GMALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNP 233
G A+ + +K KN+ TA FAR LLE P A++AR++ Q C D +L YD NP
Sbjct: 1101 GSAMGLCYKQKNFATAEHFARMLLENNPNEAQARRARQVQQQC-SGKKDSSELNYDYRNP 1159
Query: 234 FSICG 248
F +CG
Sbjct: 1160 FVVCG 1164
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 260 PIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGKDALGLRICPLQ 403
PIYRG+ + C C + F+P +G+LC +C +A +G DA GL P Q
Sbjct: 1169 PIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLVCSPTQ 1216
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 2 AYFTHCKLQPVHQILTL 52
AYFT+CKLQ VH L L
Sbjct: 1084 AYFTNCKLQRVHMRLVL 1100
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +3
Query: 54 GMALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNP 233
G A+ + +K KN+ TA FAR LLE P A++AR++ Q C D +L YD NP
Sbjct: 1101 GSAMGLCYKQKNFATAEHFARMLLENNPNEAQARRARQVQQQC-SGKKDSSELNYDYRNP 1159
Query: 234 FSICG 248
F +CG
Sbjct: 1160 FVVCG 1164
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 260 PIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGKDALGLRICPLQ 403
PIYRG+ + C C + F+P +G+LC +C +A +G DA GL P Q
Sbjct: 1169 PIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQ 1216
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 2 AYFTHCKLQPVHQILTL 52
AYFT+CKLQ VH L L
Sbjct: 1084 AYFTNCKLQRVHMRLVL 1100
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +3
Query: 54 GMALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNP 233
G A+ + +K KN+ TA FAR LLE P A++AR++ Q C D +L YD NP
Sbjct: 1101 GSAMGLCYKQKNFATAEHFARMLLENNPNESQAKRARQVQQQC-SGKKDSCELNYDYRNP 1159
Query: 234 FSICG 248
F +CG
Sbjct: 1160 FVVCG 1164
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +2
Query: 260 PIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAEIGKDALGLRICPLQ 403
PIYRG+ + C C + F+P +G+LC +C +A +G DA GL P Q
Sbjct: 1169 PIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQ 1216
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +2
Query: 2 AYFTHCKLQPVHQILTL 52
AYFT+CKLQ VH L L
Sbjct: 1084 AYFTNCKLQRVHMRLVL 1100
>05_03_0250 +
10955281-10955419,10955524-10955727,10955985-10956065,
10956147-10956287,10956378-10956410,10956809-10956909,
10957282-10957912,10959378-10959514
Length = 488
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 236 QHLRDQHKPIYRGKPEEKCSLCAASFMPEHKGK 334
+H R P+Y G P++ C C A F E + +
Sbjct: 197 RHRRTIFSPLYLGGPDQTCRYCGALFWYEERAR 229
>01_01_1125 - 8920590-8924372
Length = 1260
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +3
Query: 51 CGMALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEH 227
C + + F +K A S R+ E+ RP + I C+ TD L+D++
Sbjct: 617 CNVLIKALFMIKKVDDACSLFLRMPEMRLRPNIVTYHTVIDMMCKLGETDRALQLFDDY 675
>12_02_0858 +
23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +3
Query: 132 GPRPEVAQQARKILQACEKTPTDEHQLLYDEHNPFSICGI 251
G + +++ ACE H+ LY NP+ + G+
Sbjct: 170 GEAKYIGNSGQEMQVACETAKEPSHRALYGSKNPYQLTGL 209
>08_02_0412 + 16865138-16865392
Length = 84
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 411 LLNCKGQIRRPSASLPISATPHTGHSFPLCSGMKLAAHSEHFS 283
+ +C+G +RP+ P++A P H L ++L+ + H S
Sbjct: 1 MAHCRGLRQRPALRAPVAAPPVPRHIVLLQPLLRLSGFTRHLS 43
>06_01_0614 +
4448129-4448157,4448733-4449231,4449512-4449550,
4449590-4449802,4449941-4450227,4450456-4450567,
4451515-4451751,4451857-4451957,4452285-4452384,
4452509-4453141
Length = 749
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 187 FSQAWRIFRACWATSGRGPSSRRRLANEAAVR-*FFSLKN 71
+S WR + AC+ + RRRLA + ++R FFS ++
Sbjct: 667 YSHHWRTWAACFIQAAWRRYKRRRLAKDLSIRESFFSRRS 706
>05_03_0685 + 16992899-16993570
Length = 223
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 287 KCSLCAASFMPEHKGKLCPVCG 352
+C++C A F +G+L P CG
Sbjct: 135 ECAICIAEFADGEEGRLLPRCG 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,227,184
Number of Sequences: 37544
Number of extensions: 226990
Number of successful extensions: 745
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -