Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30237
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)              42   6e-04
SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01)                   30   1.4  
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_19784| Best HMM Match : PHD (HMM E-Value=0.0006)                    30   1.9  
SB_17570| Best HMM Match : PHD (HMM E-Value=0.0006)                    30   1.9  
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)                        30   1.9  
SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)          30   1.9  
SB_54423| Best HMM Match : RVT_1 (HMM E-Value=7.7e-32)                 30   1.9  
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_41882| Best HMM Match : Amelogenin (HMM E-Value=2)                  29   2.5  
SB_6316| Best HMM Match : tRNA_int_endo (HMM E-Value=0.016)            29   4.3  
SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     28   7.5  
SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_25108| Best HMM Match : Cornifin (HMM E-Value=0.00015)
          Length = 858

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +2

Query: 2  AYFTHCKLQPVHQILTLR 55
          AYFTHC LQP+HQILTLR
Sbjct: 3  AYFTHCNLQPIHQILTLR 20


>SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
          Length = 637

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 278 PEEKCSLCAASFMPEHKGKLCPVC-GVAEIGK 370
           P EKCS+C  +    H+  LC  C G + I K
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCCKGQSHIKK 133


>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1800

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 278  PEEKCSLCAASFMPEHKGKLCPVC 349
            P EKCS+C  +    H+  LC  C
Sbjct: 1007 PSEKCSVCLRTIARNHRAVLCDCC 1030


>SB_19784| Best HMM Match : PHD (HMM E-Value=0.0006)
          Length = 198

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 278 PEEKCSLCAASFMPEHKGKLCPVC 349
           P EKCS+C  +    H+  LC  C
Sbjct: 35  PSEKCSVCLRTIARNHRAVLCDCC 58


>SB_17570| Best HMM Match : PHD (HMM E-Value=0.0006)
          Length = 243

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 278 PEEKCSLCAASFMPEHKGKLCPVC 349
           P EKCS+C  +    H+  LC  C
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCC 125


>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 278 PEEKCSLCAASFMPEHKGKLCPVC 349
           P EKCS+C  +    H+  LC  C
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCC 125


>SB_2748| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7e-08)
          Length = 438

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 278 PEEKCSLCAASFMPEHKGKLCPVC 349
           P EKCS+C  +    H+  LC  C
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCC 125


>SB_54423| Best HMM Match : RVT_1 (HMM E-Value=7.7e-32)
          Length = 775

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 278 PEEKCSLCAASFMPEHKGKLCPVC 349
           P EKCS+C  +    H+  LC  C
Sbjct: 102 PSEKCSVCLRTIARNHRAVLCDCC 125


>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 278 PEEKCSLCAASFMPEHKGKLCPVC 349
           P EKCS+C  +    H+  LC  C
Sbjct: 750 PSEKCSVCLRTIARNHRAVLCDCC 773


>SB_41882| Best HMM Match : Amelogenin (HMM E-Value=2)
          Length = 264

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 32  VHQILTLRHGPQHVLQAEELPHGRF 106
           +HQ + + H P+  +Q+E +P G F
Sbjct: 117 MHQAINVEHHPEPAIQSESIPEGHF 141


>SB_6316| Best HMM Match : tRNA_int_endo (HMM E-Value=0.016)
          Length = 280

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 263 IYRGKPEEKCSLCAASFMPEHKGK---LCPVCGVAEIGKDALGLRICPLQF 406
           + + +P   CSLC  S + EH  K   +C V   +EI K+ L L  C  +F
Sbjct: 225 VVQSRPLTWCSLCGLSRVNEHAAKEVMICYVIKPSEIMKEDLILPSCIPRF 275


>SB_22144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 245 ADAERVMLVVEQLVLISRGLLAGLEDLPRLLGDLRPG 135
           A A  +  +V  L  ++RG+  GL D+ + LG+L PG
Sbjct: 536 AVATTIAAIVTSLSSVARGVGNGLMDIGKKLGELLPG 572


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 27  SPCTRSSRCGMALNMFFKLKNYRTA 101
           S C R S CG  +NMF  L  YR A
Sbjct: 708 SSCCRVSLCGSVINMFSVLLLYRRA 732


>SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 435 RDFNVQVYLLNCKGQIRRPSASLPISATP 349
           +D+N+  + L+C G + RP   L + + P
Sbjct: 248 KDYNIFKHALSCNGFLSRPDEGLQVKSEP 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,323,085
Number of Sequences: 59808
Number of extensions: 260106
Number of successful extensions: 964
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)