Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30237
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    90   1e-18
Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF179216-1|AAF67040.1|  233|Caenorhabditis elegans NHR-25 protein.     28   5.0  
AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha ...    28   5.0  
Z81068-12|CAJ30227.1|  558|Caenorhabditis elegans Hypothetical p...    27   8.7  
Z81068-2|CAB02984.1|  562|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
            protein Y71F9AL.17 protein.
          Length = 1232

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 39/62 (62%), Positives = 46/62 (74%)
 Frame = +3

Query: 60   ALNMFFKLKNYRTAASFARRLLELGPRPEVAQQARKILQACEKTPTDEHQLLYDEHNPFS 239
            A+N FFK+K  +T AS  +RLLEL P+PEVA Q RK+L A EK  TD HQL YDEHNPF 
Sbjct: 1117 AINTFFKMKQMKTCASLCKRLLELAPKPEVAAQIRKVLTAAEKDNTDAHQLTYDEHNPFV 1176

Query: 240  IC 245
            +C
Sbjct: 1177 VC 1178



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 40/134 (29%), Positives = 59/134 (44%)
 Frame = +2

Query: 2    AYFTHCKLQPVHQILTLRHGPQHVLQAEELPHGRFVXXXXXXXXXXXXXXXXSAEDPPGL 181
            AYFTH +LQP+H+ILTLR       + +++     +                  +     
Sbjct: 1098 AYFTHFELQPMHRILTLRSAINTFFKMKQMKTCASLCKRLLELAPKPEVAAQIRKVLTAA 1157

Query: 182  REXXXXXXXXXXXXXXXVQHLRDQHKPIYRGKPEEKCSLCAASFMPEHKGKLCPVCGVAE 361
             +                     Q  P+YRG+P  KC  C AS+    +G++C VC VAE
Sbjct: 1158 EKDNTDAHQLTYDEHNPFVVCSRQFVPLYRGRPLCKCPYCGASYSEGLEGEVCNVCQVAE 1217

Query: 362  IGKDALGLRICPLQ 403
            +GK+ LGLRI  L+
Sbjct: 1218 VGKNVLGLRISTLK 1231


>Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical
           protein F11C1.6a protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 317 PEHKGKLCPVCG 352
           P H+G++CPVCG
Sbjct: 11  PNHEGEMCPVCG 22


>AF179216-1|AAF67040.1|  233|Caenorhabditis elegans NHR-25 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 317 PEHKGKLCPVCG 352
           P H+G++CPVCG
Sbjct: 11  PNHEGEMCPVCG 22


>AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha
           protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 317 PEHKGKLCPVCG 352
           P H+G++CPVCG
Sbjct: 7   PNHEGEMCPVCG 18


>Z81068-12|CAJ30227.1|  558|Caenorhabditis elegans Hypothetical
           protein F25H5.3d protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 151 ATSGRGPSSRRRLANEAAVR*FFSLKNMLRAMPQREDLVHGLELAVRE 8
           + SGRG  +RR    E     +F  +  L A+P    + H   L +RE
Sbjct: 21  SASGRGRLARRMTIEEEHAGDYFKQEQKLAAVPATTHMEHLCRLDIRE 68


>Z81068-2|CAB02984.1|  562|Caenorhabditis elegans Hypothetical
           protein F25H5.3a protein.
          Length = 562

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 151 ATSGRGPSSRRRLANEAAVR*FFSLKNMLRAMPQREDLVHGLELAVRE 8
           + SGRG  +RR    E     +F  +  L A+P    + H   L +RE
Sbjct: 25  SASGRGRLARRMTIEEEHAGDYFKQEQKLAAVPATTHMEHLCRLDIRE 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,199,408
Number of Sequences: 27780
Number of extensions: 190445
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)