Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30237
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 453 LIIIIKYVLYVSYLFYFCSSFVRSFGHSLTSQE 551
           LIII   + Y+S +FY+ S+ V    +++ S +
Sbjct: 322 LIIIYTILTYMSGVFYYLSTTVNPLLYNIMSNK 354


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 155 LGDLRPGSEL*EAPRERSGRAV 90
           LGD++PGS +      RSG +V
Sbjct: 385 LGDIKPGSIIENIAHTRSGYSV 406


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 239 HLRDQHKPIYRGKPEEKCSLCAASF 313
           H+   H+  + G+   KC+LC  +F
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETF 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,074
Number of Sequences: 438
Number of extensions: 2004
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)