Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30236
         (732 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000069E731 Cluster: Vomeronasal type-1 receptor 2 (V...    35   2.4  
UniRef50_Q4A7A0 Cluster: ABC transporter ATP-binding-Pr1-like pr...    33   5.5  

>UniRef50_UPI000069E731 Cluster: Vomeronasal type-1 receptor 2
           (V1r-like receptor 2) (hGPCR25).; n=1; Xenopus
           tropicalis|Rep: Vomeronasal type-1 receptor 2 (V1r-like
           receptor 2) (hGPCR25). - Xenopus tropicalis
          Length = 309

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +1

Query: 208 FCYTITL*IILVLFMTLYTIAVSFLTVTVTISIEICML-----QSFNILCIEYKSANIVA 372
           FCY I L  I  +  T++T  + +L VT+     + ML      S  +  ++  + ++  
Sbjct: 163 FCYAIFLDYIPEIVSTMFTTGIDYLNVTIMTLCSVTMLVLLKRHSQQVRYLQSTTQSVEV 222

Query: 373 *ASR*CTKFISLYPLFY 423
            AS+     +SLY LF+
Sbjct: 223 KASKIIISLVSLYVLFH 239


>UniRef50_Q4A7A0 Cluster: ABC transporter ATP-binding-Pr1-like
           protein; n=5; Mycoplasma hyopneumoniae|Rep: ABC
           transporter ATP-binding-Pr1-like protein - Mycoplasma
           hyopneumoniae (strain 7448)
          Length = 536

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
 Frame = +1

Query: 235 ILVLFMTLYTIAVSFLTVTVTISIEICMLQSFNILC--IEYKSANIVA*ASR*CTKFISL 408
           IL LF+T   I +  L   + + I I +L +F+ +   ++ K   I++  ++   KF SL
Sbjct: 149 ILFLFLTEVNIWIIILHCVIALIISIIILINFSSVLNKLQEKLEKILSLNAKKQIKFFSL 208

Query: 409 YPLFY-SSKRTYYK-FLK 456
           + LFY  +KR  +K FLK
Sbjct: 209 FKLFYFFNKRKIFKTFLK 226


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,219,851
Number of Sequences: 1657284
Number of extensions: 11466476
Number of successful extensions: 22925
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22885
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)