Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30236
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    26   6.4  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   8.4  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 344 MHNILNDCNIHISMLI---VTVTVRKLTAIV*RVINKTRIIYNV 222
           +HN L  CN H+SML      +T   L   + +++N   +++N+
Sbjct: 274 VHNYLESCNNHLSMLTGPSEDITFSSLIKDIKKILNS--LVWNI 315


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 628 WLEYFRNEIIL*TSQEERFRSRNGPVK 708
           W   F +E+ L +S+ +RFR+ N P+K
Sbjct: 112 WTSEF-SEVFLNSSENDRFRNLNQPLK 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,689
Number of Sequences: 5004
Number of extensions: 53912
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)