Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30236
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52790| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2)                29   2.9  
SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   6.8  
SB_14753| Best HMM Match : UCR_TM (HMM E-Value=3.9)                    28   6.8  
SB_41502| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_52790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 205 IFCYTITL*IILVLFMTLYT-IAVSFLTVTVTISIEICMLQSFNILCIEYKSANIVA*AS 381
           I  + + + +I+++F+ +   I + F+ + VT+ I   M+QS NIL  +     +   AS
Sbjct: 114 IIIFIVIVVVIIIIFIAIVVVIIIIFIVIIVTVIIIFMMIQSSNIL--DGSCFRVTLKAS 171

Query: 382 R*CTKFISLYP 414
             C+  + LYP
Sbjct: 172 --CSMDLRLYP 180


>SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2)
          Length = 213

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +1

Query: 217 TITL*IILVLFMTLYTIAVSFLTVTVTISIEICMLQSFNILCIEYKSANIV 369
           TIT+ I + + +T+    +  +T+T+TI+I I ++    ++ +     NI+
Sbjct: 128 TITITITITITITITITIIIIITITITITITITIIIIIILIIVVVTIVNII 178


>SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +1

Query: 217  TITL*IILVLFMTLYTIAVSFLTVTVTISIEICML 321
            TIT+ I++V+ +T+       +T+T+TI+I I ++
Sbjct: 1452 TITIIIVIVIVITITITITITITITITITITIIII 1486


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +1

Query: 220  ITL*IILVLFMTLYTIAVSFLTVTVTISIEICMLQSFNILCIEYKSANIV 369
            IT+  +++LF+T++++ + F+TV   I + I +  S  IL I   S  I+
Sbjct: 1119 ITVFSVIILFITVFSVIILFITVFSVIILFITVF-SVTILFITVFSVTIL 1167


>SB_14753| Best HMM Match : UCR_TM (HMM E-Value=3.9)
          Length = 107

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +1

Query: 244 LFMTLYTIAVSFLTVTVTISIEI 312
           + +T+ TI++S +T+TVTI+I I
Sbjct: 1   MIVTIITISISIITITVTIAIII 23


>SB_41502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 211 CYTITL*IILVLFMTLYTIAVSF-LTVTVTISIEI 312
           C TIT+ I + + +T+ TI ++  +T+T+TI+I I
Sbjct: 20  CITITITITITITITI-TITITINITITITITITI 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,644,061
Number of Sequences: 59808
Number of extensions: 368276
Number of successful extensions: 1214
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)