Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30236
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine r...    28   5.9  
Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 232 IILVLFMTLYTIAVSFLT-VTVTISIEICMLQSFNILCIEYKSANIV 369
           I+ V+ M+LY    SF+  + V +S  IC+      L   YK+AN V
Sbjct: 138 IVFVVLMSLYQHEESFVNNIQVALSFVICLCLVVLFLVNRYKTANSV 184


>Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 232 IILVLFMTLYTIAVSFLT-VTVTISIEICMLQSFNILCIEYKSANIV 369
           I+ V+ M+LY    SF+  + V +S  IC+      L   YK+AN V
Sbjct: 138 IVFVVLMSLYQHEESFVNNIQVALSFVICLCLVVLFLVNRYKTANSV 184


>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
 Frame = +1

Query: 220 ITL*IILVLFMTLYTIAVSFLTVTVT---ISIEICMLQSFNILCIEYKSANIVA*ASR*C 390
           +T+  ++VL  +  ++  S +TVTV+   +++ + ++++  +L ++Y   + +  AS   
Sbjct: 50  LTMFWLIVLIKSESSVTKSMMTVTVSQIFVNLSVRLIKTAILLLVQYPQFSWLFVASSVE 109

Query: 391 TKFISLYPLFYSSKRTYYKFLKIIFLTTKW 480
           T F     L ++S    Y FL+   L + W
Sbjct: 110 TSFHYTLYLQFTSSVLLYVFLREKDLKSSW 139


>AF039042-11|AAC48251.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein199 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 443 INFLKLYFLQLSGVIQY*PGHFYRIKYFAVSGSHKVFLII 562
           I F+ +YF  L+G++      FY+I  F    + K + I+
Sbjct: 102 IYFIIIYFFMLNGIVSIFENRFYKICSFTSKNTWKFWRIV 141


>Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical
           protein T03F7.6 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 391 TKFISLYPLFYSSKRTYYKFLKIIFLTTKWCYT---ILARSFLP 513
           T+F  +  LF ++KR YY+ L I+ LT ++  +    L RS LP
Sbjct: 87  TRFQLVMYLFCAAKRRYYETLGIVSLTRRYLLSESFELCRSSLP 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,930
Number of Sequences: 27780
Number of extensions: 294267
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)