Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30236
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50710.1 68416.m05548 F-box family protein contains F-box dom...    28   5.6  
At1g71120.1 68414.m08207 GDSL-motif lipase/hydrolase family prot...    27   9.7  

>At3g50710.1 68416.m05548 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = +1

Query: 283 TVTVTISIEICM--LQSFNILCIEYKS 357
           TV + + I++C   L+S +++C+EYK+
Sbjct: 142 TVVLNVPIDVCFPSLKSLHLVCVEYKT 168


>At1g71120.1 68414.m08207 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 362

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 580 NGTSNYYN*KNFM*ARNREILDTVKMTGLVLYNT 479
           NGTSN+ N  NF  A +  +LDT K  G+    T
Sbjct: 103 NGTSNFSNGINFASAGSGLLLDTNKFMGVTPIQT 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,888
Number of Sequences: 28952
Number of extensions: 245079
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)