Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30235
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
 Frame = +3

Query: 138 ELEATN-YAWDIVNNWNNKLD------IWALRYGPVILGACS 242
           E   TN Y + +V  W N LD      IWA     + + ACS
Sbjct: 409 EHNGTNGYQYQVVGKWFNSLDIRTEELIWARGTKDIPISACS 450


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
 Frame = +3

Query: 138 ELEATN-YAWDIVNNWNNKLD------IWALRYGPVILGACS 242
           E   TN Y + +V  W N LD      IWA     + + ACS
Sbjct: 499 EHNGTNGYQYQVVGKWFNSLDIRTEELIWARGTKDIPISACS 540


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 117 KDAVTLDELE-ATNYAWDIVNNWNNKLDIWALRYGPV 224
           +DA+   E +   NY  DI + W++K+ +  LRY  V
Sbjct: 51  QDAILSGEYDYKNNYPSDI-DQWHDKIFVTMLRYNGV 86


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 117 KDAVTLDELE-ATNYAWDIVNNWNNKLDIWALRYGPV 224
           +DA+   E +   NY  DI + W++K+ +  LRY  V
Sbjct: 51  QDAILSGEYDYKNNYPSDI-DQWHDKIFVTMLRYNGV 86


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 117 KDAVTLDELE-ATNYAWDIVNNWNNKLDIWALRYGPV 224
           +DA+   E +   NY  DI + W++K+ +  LRY  V
Sbjct: 51  QDAILSGEYDYKNNYPSDI-DQWHDKIFVTMLRYNGV 86


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  DMKFLHHGINESQNNPERCSNVGRVRSHQL 157
           DM+FL   ++   N+P +     ++ +H +
Sbjct: 231 DMRFLDEPLSGETNDPNKTEYTLKIYTHDI 260


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 87  MALMKAKTIPKDAVTLDELEATNYAWDIVNNWNN 188
           MA+MK + IP++A+ +      N  +  V  W N
Sbjct: 55  MAMMKGEYIPENALPVGIEIWRNKLFVTVPRWRN 88


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  DMKFLHHGINESQNNPERCSNVGRVRSHQL 157
           DM+FL   ++   N+P +     ++ +H +
Sbjct: 231 DMRFLDEPLSGETNDPNKTEYTLKIYTHDI 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,690
Number of Sequences: 438
Number of extensions: 3844
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)