Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30235
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74510.2 68414.m08632 kelch repeat-containing F-box family pr...    30   1.2  
At1g74510.1 68414.m08631 kelch repeat-containing F-box family pr...    30   1.2  
At3g02710.1 68416.m00262 nuclear associated protein-related / NA...    27   8.8  

>At1g74510.2 68414.m08632 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 451

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 114 PKDAVTLDELEATNYAWDIVNNWNNKLDIW 203
           P  AV  DEL A NYA   V  ++ +L++W
Sbjct: 346 PLVAVVKDELYAANYAQQEVKKYDKRLNVW 375


>At1g74510.1 68414.m08631 kelch repeat-containing F-box family
           protein contains Pfam:PF01344 Kelch motif, Pfam:PF00646
           F-box domain
          Length = 451

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 114 PKDAVTLDELEATNYAWDIVNNWNNKLDIW 203
           P  AV  DEL A NYA   V  ++ +L++W
Sbjct: 346 PLVAVVKDELYAANYAQQEVKKYDKRLNVW 375


>At3g02710.1 68416.m00262 nuclear associated protein-related /
           NAP-related similar to Nuclear associated protein (NAP)
           (NYD-SP19) (Swiss-Prot:Q8WYA6) [Homo sapiens]
          Length = 529

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -3

Query: 514 SIISKHHSQM*VLRSLDKLHLSLFVRLKHASHNILDILHFSKVTNQLILS 365
           +I + H SQ    R  D + LSL   L+ +SHN ++ L   K   +L+LS
Sbjct: 12  AIDAGHGSQPTAYRGSDGVDLSLLEALEKSSHNGVEALDL-KTLKKLVLS 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,081,420
Number of Sequences: 28952
Number of extensions: 245227
Number of successful extensions: 510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)