Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30234
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.7  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   5.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   5.7  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   7.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.6  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 19  NLLVQHHETNARGRQ 63
           N+L++HHE  A G Q
Sbjct: 113 NMLLRHHEEVADGHQ 127


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 19  NLLVQHHETNARGRQ 63
           N+L++HHE  A G Q
Sbjct: 113 NMLLRHHEEVADGHQ 127


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 19  NLLVQHHETNARGRQ 63
           N+L++HHE  A G Q
Sbjct: 113 NMLLRHHEEVADGHQ 127


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 606 GPRALRLEHELSFQRGKVLAH 544
           GP ++ + +E+S  + KVL H
Sbjct: 20  GPNSVGVSNEVSLPQFKVLGH 40


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 321 SLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCP 425
           +LP ++  P P R    L  + + SPT P   + P
Sbjct: 70  ALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPP 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,767
Number of Sequences: 336
Number of extensions: 2434
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)