Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30234
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793     29   3.7  
03_02_0609 - 9823120-9823573,9823903-9824102,9824240-9824335,982...    29   4.9  
08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785     28   6.4  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    28   6.4  
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134...    28   8.5  

>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
          Length = 576

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +3

Query: 321 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 446
           S  R++  P P +K  P P  +   P      R   CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571


>03_02_0609 -
           9823120-9823573,9823903-9824102,9824240-9824335,
           9824454-9824567,9824711-9824774,9825206-9825312
          Length = 344

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 270 RARGGPQNRNCR*ESSCSLPRRKAHPLP-GRKENPLPRESARSPTLPRCQTCPLPS*RD 443
           R R    +R  R  S    PRR   P   G++ NP P    RSP  P+ +  P P   D
Sbjct: 206 RGRRDRDDRRSRSLSYSRSPRRSISPAANGKERNPSPN-GRRSPRSPQDRVSPPPKDND 263


>08_02_0494 + 17774040-17774064,17774581-17774651,17774733-17775785
          Length = 382

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 575 FLFNGVRFWHIYLDGDGSVDWD 510
           F+ NG  + H+++DG  S+ WD
Sbjct: 132 FISNGTLYHHLHVDGPVSLSWD 153


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +3

Query: 327 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 428
           PRR A P  GR  +P P  S RSP  PR    P+
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260


>01_05_0724 -
           24612712-24612852,24612985-24613038,24613340-24613429,
           24613499-24613780,24613926-24614119,24614379-24614508,
           24614610-24614690,24614766-24614891,24615019-24615076,
           24615319-24615380,24615753-24615803,24615946-24616065,
           24616280-24616403,24616832-24616920,24617304-24617396,
           24617910-24618063,24618673-24619178
          Length = 784

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 345 PLPGRKENPLPRESARSPTLPRCQTCPLP 431
           PLP R+  PLP  SA  P     +  PLP
Sbjct: 16  PLPPRRRLPLPSSSASFPRAGHHRRLPLP 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,403
Number of Sequences: 37544
Number of extensions: 320692
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)