Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30234
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 31 1.2
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8) 31 1.2
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 30 2.2
SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_45107| Best HMM Match : efhand (HMM E-Value=1.9e-07) 29 3.8
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 29 3.8
SB_21164| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 29 5.0
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19) 29 5.0
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 29 5.0
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4) 28 6.6
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06) 28 8.7
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 309 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 488
+++ +LP K + LP S + PT P+ T PS + T TATLPS K
Sbjct: 240 QTTTTLPSTKQPTTTQQTTTTLP--STKQPTTPQLTTTTFPSTKQPTTTQQTTATLPSTK 297
Query: 489 E 491
+
Sbjct: 298 Q 298
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +3
Query: 309 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 488
+++ +LP K + +P S + PT + T LPS + T T TLPS K
Sbjct: 208 QTTTTLPSTKQPTTTQQTTTTIP--STKQPTTTQQTTTTLPSTKQPTTTQQTTTTLPSTK 265
Query: 489 EGALP 503
+ P
Sbjct: 266 QPTTP 270
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +3
Query: 309 ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRK 488
+++ +LP K P P S + PT + T LPS + T TATLP+
Sbjct: 256 QTTTTLPSTKQPTTPQLTTTTFP--STKQPTTTQQTTATLPSTKQPTTTQQTTATLPT-- 311
Query: 489 EGALPSTV 512
P+TV
Sbjct: 312 PSTKPTTV 319
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = -1
Query: 433 LGKGHV*QRGRVGERALSRGRGFSFLPGRGCAFRRGR 323
L KG V +GR+G R RGRG + PGRG RGR
Sbjct: 83 LNKGSV--QGRLGARG--RGRGMARGPGRGMVGARGR 115
>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
Length = 1007
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V V
Sbjct: 197 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYSWVSVATYSLVSV 256
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 257 ATYNWVSVATYSWVSV 272
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 5 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 64
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 65 ATYNWVSVATYNWVSV 80
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 21 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 80
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 81 ATYNWVSVATYNWVSV 96
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 37 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 96
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 97 ATYNWVSVATYNWVSV 112
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 53 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 112
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 113 ATYNWVSVATYNWVSV 128
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 69 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 128
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 129 ATYNWVSVATYNWVSV 144
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 85 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 144
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 145 ATYNWVSVATYNWVSV 160
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 101 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 160
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 161 ATYNWVSVATYNWVSV 176
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 117 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 176
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 177 ATYNWVSVATYNWVSV 192
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 133 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 192
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 193 ATYNWVSVATYNWVSV 208
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 149 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 208
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 209 ATYNWVSVATYNWVSV 224
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRVGDVLFDGV 325
WV ++WV + NW +NWV N V + ++ V + + V + V
Sbjct: 165 WVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSVATYNWVSV 224
Query: 324 GNRNFLN-DSYGFVDL 280
N+++ +Y +V +
Sbjct: 225 ATYNWVSVATYNWVSV 240
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGL 397
WV + WV + +W +NWV DN V +
Sbjct: 285 WVSVATYSWVSVATYSWVSVATYNWVSVATDNWVSV 320
>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 417 FDNGVGLGNVHFHGVGDFLFYRVGDVLFDGVGN 319
FD+G+G+G H H YRV DV +DG G+
Sbjct: 793 FDDGIGVGIAHNH-------YRVSDVDYDGAGS 818
>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
Length = 1121
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 345 PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKE 491
P P R NP P +A P+ PR + P P +G S +A PS E
Sbjct: 846 PTPLRPTNPTPAHAASKPSNPR-PSNPTPKHAMGEGVSDNSAEPPSPGE 893
>SB_46200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 315 SCSLPR--RKAHPLPGRKENPLPRESARSPTLPRCQT 419
+C LPR R + P PGR NP R + +P C T
Sbjct: 4 TCYLPREIRSSSPSPGRSANPHCRYNESNPRTQGCAT 40
>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 324 LPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALP 503
+PR +P P +NP PR + ++P +PR P PS S + PS +G+ P
Sbjct: 52 IPRVTKNPFPRVTKNPFPRVT-KNP-IPRVTKEPHPSCDQRSHPSCDQGSHPSCDQGSHP 109
Query: 504 S 506
S
Sbjct: 110 S 110
>SB_45107| Best HMM Match : efhand (HMM E-Value=1.9e-07)
Length = 270
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 389 TFPNPTPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYCPSR 520
TF +P P + + + R T+ PT+SKRR + P R
Sbjct: 151 TFQDPRPFQDHNGSSFLRNQMQYSTFPPPTESKRRAKKHHTPPR 194
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 389 TFPNPTPLSNMSLTQLKRLSRYQFTYRNPTQSKRRCLTQYCPSR 520
TF +P P + + + R T+ PT+SKRR + P R
Sbjct: 20 TFQDPRPFQDHNGSSFLRNQMQYSTFPPPTESKRRAKKHHTPPR 63
>SB_21164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -2
Query: 504 WVRHLLFDWVGLRYVNWYLDNLFNWVRDMFDNGVGLGNVHFHGVGDFLFYRV 349
W R + W + WY + W R M D G+ ++G +YRV
Sbjct: 77 WYRVTIDQWYRVTIDQWYRVTIDQWYRVMIDQWYGVTIDQWYGATIDQWYRV 128
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 345 PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALP 503
PLP + PLP + + P P PLP + G+ + S K+ LP
Sbjct: 450 PLPSDEPPPLPPDEEKPPPPPAPALPPLPLPPELPGSPGDSPPATSPKQPPLP 502
>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
Length = 1883
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 279 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 458
GG R R S +PRR ++ P PR++A S +LP P+ R G
Sbjct: 1392 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPA-RFSNGEQ 1450
Query: 459 SRTATL 476
++ + L
Sbjct: 1451 AKPSKL 1456
>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
Length = 754
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 279 GGPQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTS 458
GG R R S +PRR ++ P PR++A S +LP P+ R G
Sbjct: 263 GGHMLRTVRRPLSAPMPRRSTSISDLARDLPTPRQAAHSASLPDLTMVQTPA-RFSNGEQ 321
Query: 459 SRTATL 476
++ + L
Sbjct: 322 AKPSKL 327
>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 HPLPGRKE-NPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPST 509
HP P +++ +P P + R P + Q P PS + Q S+ P + P T
Sbjct: 202 HPRPSQQQRHPRPSQQQRHPRPSQQQRYPRPSQQQRQPRPSQQQRYPRHNQQQTPET 258
>SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4)
Length = 369
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 502 GKAPSFRL-GRVAVRELVP*QSL*LGK-GHV*QRGRVGERALSRGRGFSFLPGRGCAFRR 329
G+ FR+ G V E V + GK GHV RG+V R +RG+ + +P G + R
Sbjct: 68 GRVTPFRVYGHVPTHERVSRRVHTHGKYGHVPARGKVYGRVPARGKVYGRVPTYGKVYER 127
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 327 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 506
P + HP PG P+ + +P +PR T PLP ++ SRT+T PS + PS
Sbjct: 141 PSFQDHPGPGVMPQMPPQMAPGTPLMPRIPTPPLP--QNMGLGLSRTST-PSPELRVSPS 197
>SB_9722| Best HMM Match : EGF_CA (HMM E-Value=2.4e-06)
Length = 673
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 395 PNPTPLSNMSLTQLKRLSRYQF 460
PNP P +NM+ +LK RY++
Sbjct: 524 PNPCPSTNMTCVELKGTPRYRY 545
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,853,521
Number of Sequences: 59808
Number of extensions: 334848
Number of successful extensions: 3609
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3572
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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