Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30234
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -1

Query: 385 LSRGRGFSFLPGRGCAFRRGREQELS*RQLRFCGPPRARH 266
           L +G G  +LP  GC  + G + ++  ++   C   + +H
Sbjct: 233 LCKGDGKWYLPSGGCHCKPGYQADVEKQECTECPIGKFKH 272


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +3

Query: 369 PLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTVPVDR 524
           PLP      PT+P   +   P  R     S+ +       EG +   V VDR
Sbjct: 431 PLPNMPGSMPTMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAVDR 482


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 606 GPRALRLEHELSFQRGKVLAH 544
           GP ++ + +E+S  + KVL H
Sbjct: 173 GPNSVGVSNEVSLPQFKVLGH 193


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 529 SPSRYMCQNLTPLKRKFMFQSKCTWPAPLPSREE 630
           S  RY   N T      + +S  TWP  L ++ E
Sbjct: 373 SVGRYFYPNGTEKMTLSVNESNITWPGRLQTKPE 406


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 606 GPRALRLEHELSFQRGKVLAH 544
           GP ++ + +E+S  + KVL H
Sbjct: 112 GPNSVGVSNEVSLPQFKVLGH 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,273
Number of Sequences: 438
Number of extensions: 3736
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)