Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30234
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66850.1 68418.m08428 protein kinase family protein contains ...    32   0.44 
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t...    28   5.4  
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    28   5.4  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    27   9.4  

>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +3

Query: 285 PQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDC 446
           PQ R+ R +     P R + PL     +  PR+S  SP  PR  T      RDC
Sbjct: 253 PQPRSPRKQIRSPQPSRPSSPLHSVDSSAPPRDSVSSPLHPRLSTDVTNGRRDC 306


>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein identical to
           pEARLI 1 (Accession No. L43080): an Arabidopsis member
           of a conserved gene family (PGF95-099), Plant Physiol.
           109 (4), 1497 (1995); contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 168

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 324 LPRRKAHPLPGRKENPLPRESARSPTLP 407
           +P  K  P+P  K  P+P  S  SP++P
Sbjct: 39  VPSPKPKPVPSPKPKPVPSPSVPSPSVP 66


>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
           domain-containing protein contains Pfam profiles
           PF02170: PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -2

Query: 405 VGLGNVHFHGVGDFLFYRVGDVLFDGVGN 319
           VG+G+V   GVGD     VGDV  DGVG+
Sbjct: 194 VGVGDVGQGGVGDVGQGGVGDVGRDGVGD 222


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = +3

Query: 327 PRRKAHPLPGRKENPLPRES----ARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 494
           PRR    L  R+ +PLPR       RSP  P  +    P  R       R    PSR  G
Sbjct: 212 PRRPRERLSPRRRSPLPRRGLSPRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSR--G 269

Query: 495 ALPSTVPVDR 524
             PS+ P  R
Sbjct: 270 RSPSSPPPRR 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,353,132
Number of Sequences: 28952
Number of extensions: 232589
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)