Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30233
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    31   0.16 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   2.6  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.6  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    27   2.6  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    27   3.5  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   4.6  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.6  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    26   6.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   8.1  

>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 162 LPPGGHADHSSPHRPDGLRSGRCNSIIHIHNTTTKPPELTTRPHKPG 302
           + P   A  SSP+   G R G   S+   +  ++ PP L   P  PG
Sbjct: 249 IEPASKASASSPNPQSGTRLGTKESVAPNNEGSSNPPSLVNPPTDPG 295


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 426 TEASLLSIHQEQVQPLVEPRPQH 494
           TE  +L  HQE  QPL++   QH
Sbjct: 530 TEPQILEYHQEWPQPLIQSIQQH 552


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 277 SQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSD 411
           SQH  T+++S + HHH+ +     I   +  C H +  L  L +D
Sbjct: 528 SQHEHTHENS-QEHHHEHNHNHDHIHKYNEKCDHESISLQNLDND 571


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 534 GSDGFVIDEDLTDDSLQYLTDGREGTNQDRPQS 632
           G   F  DEDLT   L ++ D +E    D P S
Sbjct: 454 GETSFEKDEDLTAKHLSHILDFKEQEETDEPTS 486


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 289 PTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRK 417
           P +QD      H  ++TD  I G+DL+  ++ KRL T + D+K
Sbjct: 297 PFDQDDWSAWTHMKAETDFQIVGDDLTVTNV-KRLRT-AIDKK 337


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 363 FILLPLEQATQYTVIRPQEPKTEASLLSIHQEQV 464
           FI+L L+ A ++ +I P+E K +++L  + +  +
Sbjct: 182 FIILLLDIALRFLMIEPREMKNDSTLQDVERTSI 215


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 276 LTTRPHKPGFYAPSSPPSVTDR 341
           LT  P    FYAPSSP S   R
Sbjct: 48  LTPEPSSNTFYAPSSPASAVRR 69


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 507 AEDFGVEVLVQPKAGPVLDGW 445
           AEDFGV++   PK  P+L  W
Sbjct: 230 AEDFGVKISFHPK--PILGDW 248


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 375 PLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPHTKSKSRAGSDG 545
           P+++++   V   Q+P  + S LS  Q+  +PL     + +N      S SR+G  G
Sbjct: 155 PIDRSSSNPVTSSQQPPNDRSTLSSSQKAKRPLKRSYSE-KNSSNAEPSGSRSGDRG 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,358
Number of Sequences: 5004
Number of extensions: 64340
Number of successful extensions: 235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)