Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30233
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0667 - 4958924-4959523 32 0.39
11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836 30 1.6
11_01_0389 - 2937242-2939476,2939556-2939666,2941254-2941450,294... 30 1.6
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356 30 1.6
03_06_0066 + 31409676-31410034,31412237-31412351,31412482-314125... 29 2.8
04_04_1388 - 33179270-33180679 29 4.8
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 29 4.8
02_05_0100 - 25821606-25822349 29 4.8
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 28 6.4
09_04_0264 + 16228344-16228874,16229489-16229609,16230225-162302... 28 6.4
12_02_1174 - 26696869-26698191 28 8.4
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 28 8.4
10_08_0737 - 20210551-20211216 28 8.4
04_04_0228 + 23764753-23765601 28 8.4
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 28 8.4
01_04_0056 + 15476868-15476896,15477581-15478259 28 8.4
>02_01_0667 - 4958924-4959523
Length = 199
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/87 (24%), Positives = 35/87 (40%)
Frame = +3
Query: 312 PSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQ 491
P S P + +H+ + P A RP +++ S +P++ PRP
Sbjct: 72 PLSLPHAQPQLHHHHHHHLTYP---AAAVVAARPATSSLSSTVESFGTRP-RPVLPPRPP 127
Query: 492 HQNLLPHTKSKSRAGSDGFVIDEDLTD 572
+P +S GS V+D+D D
Sbjct: 128 PPPPIPDGDCRSDCGSSASVVDDDCAD 154
>11_01_0683 - 5595121-5596186,5597214-5597219,5597923-5598836
Length = 661
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 246 YG*WSYIVHFEGHLVCEVSYDLHGHREV 163
YG + F H +CE+ +D+HG EV
Sbjct: 99 YGQYHLPCRFSSHAICELDHDVHGDGEV 126
>11_01_0389 -
2937242-2939476,2939556-2939666,2941254-2941450,
2941543-2941633
Length = 877
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 357 QRFILLPLEQATQYTVI--RPQEPKTEASLLSIHQEQVQPLVEPRPQHQN 500
++ +LLP Q Q + RP P+T LL ++ P+V P P QN
Sbjct: 104 EKVMLLPFSQDVQKFICIKRPTLPETSFELLREVYPEITPVVLPSPVEQN 153
>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
Length = 444
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 108 KRSNFGARSQTASSAFRLLPPGGHADHSSPHRPDGLRSGRC 230
K++N S AS FRL+P G + DH P + R+G C
Sbjct: 337 KKTNINGESAAAS--FRLVPTG-NGDHIHPRESNDTRAGLC 374
>03_06_0066 +
31409676-31410034,31412237-31412351,31412482-31412552,
31412942-31413036,31414143-31414214,31414293-31414456,
31414725-31414760
Length = 303
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 384 QATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPHTKSKSRAGSDGFVIDED 563
+A QY +IR + + + S E+ P +P+ + +N K S GF++
Sbjct: 199 RALQY-IIRFLKSEHGGPVTSASPERSTPKEKPQKRERNEGKKQKGGSSGSGSGFLVPLQ 257
Query: 564 LTDDSLQYLTDG 599
L+DD ++++ G
Sbjct: 258 LSDDLVKFIGTG 269
>04_04_1388 - 33179270-33180679
Length = 469
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 402 VIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQNL 503
V P A LL+ H + V+PLV P P H +L
Sbjct: 41 VTTPGNAAQLAPLLAAHPDSVRPLVLPFPSHPSL 74
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 108 YYQEY*WHHHVDHFKHENPIKF 43
++Q+Y HHH ++H+N I F
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHF 171
>02_05_0100 - 25821606-25822349
Length = 247
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 165 PPGGHADHSSPHRPDGLRSGRCNSIIHIHN 254
PP GH H PH G ++ R +++ I N
Sbjct: 108 PPRGHPWHEGPHPQHGFQASRSSAVGPIRN 137
>12_02_0800 +
23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = +3
Query: 69 SDQH--DGATNIPDNKRSNFGARSQTASSAFRLLPPGGHADHSSP-HRPDGL 215
+DQH DG P N + Q F + PP + H+ P H PDG+
Sbjct: 237 TDQHVYDGGAPFPGTSLPNKAQQPQPYPGNFCVAPPHFDSWHAPPGHPPDGM 288
>09_04_0264 +
16228344-16228874,16229489-16229609,16230225-16230227,
16230663-16230911,16231191-16231344,16231719-16232244
Length = 527
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 432 ASLLSIHQEQVQPLVEPRPQHQNLLPHTKSKSRAGSDGFVIDEDLTDDSLQYLTDGREGT 611
A +L + E+ PL+ P P + H R GS + +DL D + +T G+ GT
Sbjct: 171 AEILGVQDERYWPLMSPLPSYGYGREH--RGPRYGS--LIHGQDLKDVT---ITGGQNGT 223
Query: 612 NQDRPQSW 635
+ QSW
Sbjct: 224 INGQGQSW 231
>12_02_1174 - 26696869-26698191
Length = 440
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +3
Query: 261 TKPPELTTRPHKPGFYAP--SSPPSVTD 338
T PP +T P KP P SSPPS D
Sbjct: 314 TPPPAITPEPAKPAAGKPTSSSPPSTKD 341
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.9 bits (59), Expect = 8.4
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Frame = +3
Query: 357 QRFILLPLEQATQYTVI--RPQEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPHTKSKS- 527
++ +L P Q Q + RP P+T LL ++ P+V P P QN + S
Sbjct: 117 EKDMLPPFRQDIQKFICIKRPTLPETSFELLRKVYPEITPVVPPSPVEQNGNDQHDNISH 176
Query: 528 ---RAGSDGFVID-EDLTDDSLQYLTDGREGTN 614
GF D L D L L D R N
Sbjct: 177 DLVNTEKTGFTTDGAQLQQDDLANLVDERNTEN 209
>10_08_0737 - 20210551-20211216
Length = 221
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 246 IHNTTTKPPELTTRPH 293
+H T +PP+ TTRPH
Sbjct: 5 LHQTPLQPPQTTTRPH 20
>04_04_0228 + 23764753-23765601
Length = 282
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 534 GSDGFVIDED-LTDDSLQYLTDGREGTNQDRP 626
GSD V+DED L D LQ DG +QD+P
Sbjct: 205 GSDYSVMDEDELVDYLLQGFEDGNFDEDQDQP 236
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 27.9 bits (59), Expect = 8.4
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +3
Query: 366 ILLPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPHTKSKSRAGSDG 545
+ LPL A+++ + P P LL H Q Q P LP +S SRA +
Sbjct: 10 LFLPLSSASRHAL--PHTPPAPL-LLPSHPAQAQAQARAGPLR---LPSARSPSRAAAPV 63
Query: 546 FVIDEDLTDD 575
DED DD
Sbjct: 64 SDDDEDEEDD 73
>01_04_0056 + 15476868-15476896,15477581-15478259
Length = 235
Score = 27.9 bits (59), Expect = 8.4
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Frame = +3
Query: 147 SAFRLLPPGGHADHSS--PHRPDGLRSGRCNSIIHIHNTTTK---PPELTTRPHKPGFYA 311
S FR P G++ S P+ L ++ H H T + P T KP
Sbjct: 35 SLFRRQPQFGNSRVSDTMPNCLISLARPAAPTLPHSHLTNPRHPATPTATAATPKPNTPP 94
Query: 312 PSSPPSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKTEASLLSI 449
+ P+ +H + + LP+ A +T P+E + E +LL +
Sbjct: 95 DPTRPAPHLTLHHQYSGTLPLPISLARAFTSSLPKEEEEEMTLLCV 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,705,516
Number of Sequences: 37544
Number of extensions: 474800
Number of successful extensions: 1514
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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