Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30233
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29837| Best HMM Match : MobC (HMM E-Value=6.8) 35 0.075
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 33 0.17
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67) 32 0.40
SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_9582| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_47093| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2) 31 1.2
SB_28927| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3) 31 1.2
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_28413| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_25522| Best HMM Match : Saccharop_dh_N (HMM E-Value=3.9) 30 1.6
SB_17583| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_59036| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_58849| Best HMM Match : zf-piccolo (HMM E-Value=2.8) 30 1.6
SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_37768| Best HMM Match : SpoVG (HMM E-Value=7.9) 30 1.6
SB_37548| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 30 1.6
SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86) 30 2.1
SB_51880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_51100| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06) 30 2.1
SB_13523| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_9191| Best HMM Match : TolA (HMM E-Value=1) 30 2.1
SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 30 2.1
SB_51787| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.8
SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44) 29 2.8
SB_30130| Best HMM Match : Cadherin (HMM E-Value=0.0035) 29 2.8
SB_33335| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_1672| Best HMM Match : JmjC (HMM E-Value=4.5) 29 4.9
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 29 4.9
SB_56510| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_46855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 29 4.9
SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6) 28 6.5
SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07) 28 6.5
SB_15850| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66) 28 8.6
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_9082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_5169| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_29837| Best HMM Match : MobC (HMM E-Value=6.8)
Length = 327
Score = 34.7 bits (76), Expect = 0.075
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ + T ++ ++ H+ S TIT N + +NKRLSTLSSDRK+
Sbjct: 30 NRNTYQLFTKPNAPLQYVHRESNNPLTITKNIPAS--INKRLSTLSSDRKT 78
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 33.5 bits (73), Expect = 0.17
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Frame = +3
Query: 258 TTKPPELTTRPH--KPGFYAPSSP-PSVTDRFNHYWQRFILLPLEQATQYTVIRPQEPKT 428
TTKP TT+PH KP P+ P P++ + H+ F P QA Y Q+P
Sbjct: 173 TTKPH--TTKPHTTKPHNIDPTLPSPTLLNALLHFLY-FYQAPHYQALHYKAPHYQDPHY 229
Query: 429 EASLLSIHQEQVQPLVEPRPQHQNLLPHT 515
+A Q Q P Q PHT
Sbjct: 230 KAQHNQAPHNQAQHNQTPHYQAPQYRPHT 258
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 32.3 bits (70), Expect = 0.40
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S STIT N + +NKRLSTLSSD+++
Sbjct: 319 NRNTYQPFTKPNAPLQYVHRESNHPSTITKNIPAS--INKRLSTLSSDKET 367
>SB_915| Best HMM Match : GIY-YIG (HMM E-Value=0.67)
Length = 336
Score = 32.3 bits (70), Expect = 0.40
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N T ++ ++ H+ S TIT N +S +NKRLSTLSSD+++
Sbjct: 28 NRNPYQPSTKPNAPLQYVHRESNLQPTITKN-ISA-SINKRLSTLSSDKET 76
>SB_5834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +1
Query: 280 QHVPTNQDSTR--RHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
QH+P + R ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 185 QHLPAFHQTERPIQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 231
>SB_9582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 31.9 bits (69), Expect = 0.53
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N +NKRLSTLSSD+K+
Sbjct: 142 NRNTYQPFTKPNAPLQYVHRESNNPLTITKNIPGS--INKRLSTLSSDKKT 190
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 31.9 bits (69), Expect = 0.53
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 108 KRSNFGARSQTASSAFRLLPPGGHADHSSPHRPDGLRSGRCNSIIHIHNTTTKPPEL--T 281
K +N G S S F L P GHA+H + P+ + I H N T PP+ +
Sbjct: 877 KPTNQGGSSNKEVSTF-FLKPTGHANHDASTSPEH-HGKQDEPISHQGNHTVVPPQQAHS 934
Query: 282 TRPHKPGFYAPSSPPS 329
T KP SP S
Sbjct: 935 TEDSKPSQDVKPSPDS 950
>SB_47093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 135 NRNTYQPFTKSNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 183
>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1360
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSPRQ 429
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++ Q
Sbjct: 1265 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKETFNQ 1316
>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
Length = 918
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 163 NRNTYQPFTKPNAPLQYVHRESNHQPTITKNIPAS--INKRLSTLSSDKET 211
>SB_28927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 83 NRNTYQPFTKPNAPLQYVHRESNHQPTITKNIPAS--INKRLSTLSSDKET 131
>SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)
Length = 466
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSPRQ 429
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++ Q
Sbjct: 371 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKETFNQ 422
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 295 NQDSTRRHHHQASQTDSTITGNDLSCYHLNKR 390
++ ++H HQ + +T TGND + Y +NK+
Sbjct: 1031 DKQQIQQHQHQTTNAATTNTGNDSNSYVINKQ 1062
>SB_28413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 83 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 131
>SB_25522| Best HMM Match : Saccharop_dh_N (HMM E-Value=3.9)
Length = 285
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 135 NRNTYQPFTKPNAPLQYVHRESSHPPTITKNIPAS--INKRLSTLSSDKET 183
>SB_17583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 37 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 85
>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 159 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 207
>SB_59036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 30 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 78
>SB_58849| Best HMM Match : zf-piccolo (HMM E-Value=2.8)
Length = 243
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 154 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 202
>SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 30 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 78
>SB_37768| Best HMM Match : SpoVG (HMM E-Value=7.9)
Length = 163
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 83 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 131
>SB_37548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 83 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 131
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 284 TSPQTRILRAVITTKRHRPIQPLLATIYPATT*TSDSVHCHQTARA 421
T+PQ R+VIT +RHRPI+ ++ P T +S + C + +A
Sbjct: 703 TTPQVANKRSVITRRRHRPIEG--SSSEPDTPASSCTSSCSKAIKA 746
>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
Length = 769
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +3
Query: 429 EASLLSIHQEQVQPLVEPRPQHQNLLPHTKSKSRAGSDGFVIDEDLTDD 575
E + ++ E+V+P+ QN+LPH + D + ED+ ++
Sbjct: 91 ELVTMYLNSEKVKPIHPSPTARQNILPHEPQREEKAEDVIAVLEDMLEE 139
>SB_51880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD ++
Sbjct: 32 NRNTYQPFTKPNAPLQYVHRESNHQPTITKNIPAS--INKRLSTLSSDEET 80
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = +3
Query: 87 ATNIPDNKRSNFGARSQTASSAFRLLPPGGHADHSSPHRPDGLRSGRCNSIIHIHNTTTK 266
A P++ G R + A ++ R L P H H S G + +H N T
Sbjct: 919 AWEYPEDDPQGRGVRKRPAKASSRSLSPVEHKKHRSRSLEI---PGLPSEPLHPPNEATL 975
Query: 267 PPELTTRPHK 296
PP L T P K
Sbjct: 976 PPTLRTTPQK 985
>SB_51100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD ++
Sbjct: 37 NRNTYQPFTKPNAPLQYVHRESNHQPTITKNIPAS--INKRLSTLSSDEET 85
>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
Length = 1826
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S TIT N +S +NKRLSTLSS++++
Sbjct: 707 NRNTYQPFTKPNAPLQYVHRESNNPPTITKN-ISA-SINKRLSTLSSNKET 755
>SB_13523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S +TIT N + +NKRLSTLS+D+++
Sbjct: 50 NRNTYQSFTKPNAPLQYVHRESNHPTTITKNIPAS--INKRLSTLSADKET 98
>SB_9586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T + ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 987 NRNTYQPFTKPSAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 1035
>SB_9191| Best HMM Match : TolA (HMM E-Value=1)
Length = 541
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/70 (30%), Positives = 28/70 (40%)
Frame = +3
Query: 87 ATNIPDNKRSNFGARSQTASSAFRLLPPGGHADHSSPHRPDGLRSGRCNSIIHIHNTTTK 266
A P++ G R + A ++ R L P H H S G + +H N T
Sbjct: 109 AWEYPEDDPQGRGVRKRPAKASSRSLSPVEHKKHRSRSLEI---PGLPSEPLHPPNEATL 165
Query: 267 PPELTTRPHK 296
PP L T P K
Sbjct: 166 PPTLRTTPQK 175
>SB_21276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 322 HQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
H+ S TIT N + +NKRLSTLSSD+K+
Sbjct: 78 HRESNHPPTITKNIPAS--INKRLSTLSSDKKT 108
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ H+ S T+T N + +NKRLSTLSSD+++
Sbjct: 924 NRNTYQPFTKPNAPLQYVHRESNHPPTVTKNIPAS--INKRLSTLSSDKET 972
>SB_51787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +1
Query: 292 TNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 71 TKPNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 111
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRK 417
++N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD++
Sbjct: 1128 NRNTYQPFTKLNAPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKE 1175
>SB_4535| Best HMM Match : F5_F8_type_C (HMM E-Value=3.92364e-44)
Length = 972
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 271 QNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
+N+ T DS+ ++ H+ S +IT N + +N+RLS LSSD+ S
Sbjct: 493 RNAHQPYTKPDSSLQYVHRESNHPPSITKNIPA--GINRRLSALSSDQAS 540
>SB_30130| Best HMM Match : Cadherin (HMM E-Value=0.0035)
Length = 391
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
+ N+ T ++ ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 59 NHNTYQPFTKPNAPLQYVHRESNHPLTITKNIPTS--INKRLSTLSSDKET 107
>SB_33335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T + ++ H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 30 NRNTYQPFTKPNVPLQYVHRESNHPPTITKNIPAS--INKRLSTLSSDKET 78
>SB_1672| Best HMM Match : JmjC (HMM E-Value=4.5)
Length = 281
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +1
Query: 271 QNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
+N+ T +S+ ++ H+ S +IT N + +NKRLS LSSD+ S
Sbjct: 63 RNAHQPYTKPNSSLQYVHRESNHPPSITKNIPA--GINKRLSALSSDQAS 110
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 319 HHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSPRQKPHCFPSIKNRSSLWLNQ 483
++++S+ DS G+ + ++ S SS R SPR P PSI R + + Q
Sbjct: 241 YNRSSKYDSQSGGSQRTTPAVSPYQSPSSSARSSPRGSPTASPSISRRRAKFQQQ 295
>SB_56510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +1
Query: 271 QNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSPRQKPHCFPS 450
+N+ T +S+ ++ H+ S +IT N + +N+RLS LSSD+ S Q P
Sbjct: 142 RNAHQPYTKPNSSLQYVHRESNHPPSITKNIPA--GINRRLSALSSDQASFDQTAPTLPE 199
Query: 451 IKNR 462
R
Sbjct: 200 STRR 203
>SB_46855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 135 QTASSAFRLLPPGGHADHSSPHRPDGL-RSGRC 230
QTAS+ RL+PP +A + P R + R RC
Sbjct: 311 QTASACLRLIPPSRYARNGPPERQAHVRRRARC 343
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/15 (73%), Positives = 15/15 (100%)
Frame = +1
Query: 376 HLNKRLSTLSSDRKS 420
H+NKRLSTLSSD+++
Sbjct: 1387 HINKRLSTLSSDKET 1401
>SB_17994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSPRQ 429
++N+ T ++ ++ H+ S TIT N + ++KRLSTLSSD+++ Q
Sbjct: 240 NRNTYQPFTKPNAPLQYVHRESNHPPTITKNIPAS--ISKRLSTLSSDKETFNQ 291
>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 337 TDSTITGNDLSCYHLNKRLSTLSSDR--KSPRQKPHC 441
+ T GN L LN +L LSS+R KS KPHC
Sbjct: 45 SSGTCNGNSLRV--LNAQLGILSSERVTKSTSAKPHC 79
>SB_6974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 322 HQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 4 HRESNHPPTITKNIPAS--INKRLSTLSSDKET 34
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 165 PPGGHADHSSPHRPDGLRSGRCNSIIH-IHNTTTKPPELTTRPHK 296
PP GH S PH L + ++ + +H TT PP + +P K
Sbjct: 117 PPAGHLSMSKPHTLLLLPNINYDAPDNNVHGNTTDPPRMFPKPPK 161
>SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6)
Length = 551
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 462 VQPLVEPRPQHQNLLPHTKSKSRAGSDGFVIDEDLTDDS 578
V + E RP + + H R+G DG ID LTD++
Sbjct: 208 VYVIYELRPLPEQNVTHEGKLYRSGQDGAAIDRALTDET 246
>SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07)
Length = 301
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 322 HQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
H+ S TIT N + +NKRLSTLSSD+++
Sbjct: 210 HRESNHPPTITKNIPAS--INKRLSTLSSDKET 240
>SB_15850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKSPRQ 429
++N+ T ++ ++ ++ S TIT N ++NKRLSTLSSD+++ Q
Sbjct: 55 NRNTYQPFTKPNAPLQYVNRESNHPPTITKN--IPVNINKRLSTLSSDKETFNQ 106
>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
Length = 264
Score = 27.9 bits (59), Expect = 8.6
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +3
Query: 195 PHRP-DGLRSGRCNSIIHIHNTTTKPPELTTRPHKPGFYAPSSPPSVTDRFNHYWQRFIL 371
PHRP + R + + H +PP RP +P + P PP + L
Sbjct: 77 PHRPLEPHRPQEPHRPLEPHRPL-EPP----RPQEP--HRPQEPPRPQEPHRPQEPHRPL 129
Query: 372 LPLEQATQYTVIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQN 500
P Q+ RPQEP QE +PL PRPQ Q+
Sbjct: 130 EPPRPQEQH---RPQEPHRPLEPTR-PQESHRPLEPPRPQEQH 168
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = +1
Query: 271 QNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS------PRQK 432
+N+ T +S+ ++ H+ S +IT N + +N+RLS LSSD+ S P QK
Sbjct: 1138 RNAHQPYTKPNSSLQYVHRESNHPPSITKNIPA--GINRRLSALSSDQASFDQTAPPYQK 1195
Query: 433 P 435
P
Sbjct: 1196 P 1196
>SB_9082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 399 TVIRPQEPKTEASLLSIHQEQVQPLVEPRPQHQNLLPHTKSKS 527
T+I PQ P +S ++ HQ + +P + + PH S +
Sbjct: 55 TLISPQLPHQPSSTITSHQPSYSLIGHHQPSYSPIYPHQPSST 97
>SB_5169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +1
Query: 268 HQNSQHVPTNQDSTRRHHHQASQTDSTITGNDLSCYHLNKRLSTLSSDRKS 420
++N+ T ++ ++ ++ S TIT N + +NKRLSTLSSD+++
Sbjct: 43 NRNTYQPFTKPNAPLQYVYRESNHPPTITKNIPAS--INKRLSTLSSDKET 91
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,444,987
Number of Sequences: 59808
Number of extensions: 548551
Number of successful extensions: 2260
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2250
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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